PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g08510.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 354aa    MW: 39954 Da    PI: 11.5849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g08510.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-31279329151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Zjn_sc00008.1.g08510.1.am.mk 279 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 329
                                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.193271331IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-41271330IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-29272331IPR002100Transcription factor, MADS-box
CDDcd002652.76E-39272337No hitNo description
PRINTSPR004041.6E-32273293IPR002100Transcription factor, MADS-box
PROSITE patternPS003500273327IPR002100Transcription factor, MADS-box
PfamPF003193.1E-26280327IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-32293308IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-32308329IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MIARGQYDVP PHHARARSRR SSASSHSPAC VVTGRNIPRR RGTNGSGPAA CRPCFAGTLW  60
DPYGPLVSDG GRRRVREQLG SRLLPLRYTT QGWDGMEEEK VSRLIQTGEL RPICSNNGKQ  120
HLASSRTENR RGSGAAWWMN PETIKLMERG KGGVAQKYDS TRFHPEKYAP HCRFFLPLFL  180
SPSTWFRVAH HLTQNGKERS VPITPHPFRP AFLTPRRRAI PTRFFCARLL RSPFLLPFRF  240
AFAALLGEKL ACLLRSVGRS RLAAREQGRA MGRGRVELKR IENKINRQVT FAKRRNGLLK  300
KAYELSVLCD AEVALIIFSS RGKLYEFCSG QRDVVSRESS SGPVDLSNEE MLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19271335165MEF2C
5f28_B3e-19271335165MEF2C
5f28_C3e-19271335165MEF2C
5f28_D3e-19271335165MEF2C
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333983e-83BT033398.1 Zea mays full-length cDNA clone ZM_BFb0100K01 mRNA, complete cds.
GenBankBT0879423e-83BT087942.1 Zea mays full-length cDNA clone ZM_BFb0323H23 mRNA, complete cds.
GenBankKJ7283373e-83KJ728337.1 Zea mays clone pUT6618 MADS transcription factor (MADS49) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.37e-34MIKC_MADS family protein