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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zjn_sc00008.1.g08510.1.am.mk |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
M-type_MADS |
Protein Properties |
Length: 354aa MW: 39954 Da PI: 11.5849 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zjn_sc00008.1.g08510.1.am.mk | genome | ZGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 279 | 329 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
Zjn_sc00008.1.g08510.1.am.mk 279 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 329
79***********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MIARGQYDVP PHHARARSRR SSASSHSPAC VVTGRNIPRR RGTNGSGPAA CRPCFAGTLW 60 DPYGPLVSDG GRRRVREQLG SRLLPLRYTT QGWDGMEEEK VSRLIQTGEL RPICSNNGKQ 120 HLASSRTENR RGSGAAWWMN PETIKLMERG KGGVAQKYDS TRFHPEKYAP HCRFFLPLFL 180 SPSTWFRVAH HLTQNGKERS VPITPHPFRP AFLTPRRRAI PTRFFCARLL RSPFLLPFRF 240 AFAALLGEKL ACLLRSVGRS RLAAREQGRA MGRGRVELKR IENKINRQVT FAKRRNGLLK 300 KAYELSVLCD AEVALIIFSS RGKLYEFCSG QRDVVSRESS SGPVDLSNEE MLVV
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT033398 | 3e-83 | BT033398.1 Zea mays full-length cDNA clone ZM_BFb0100K01 mRNA, complete cds. |
GenBank | BT087942 | 3e-83 | BT087942.1 Zea mays full-length cDNA clone ZM_BFb0323H23 mRNA, complete cds. |
GenBank | KJ728337 | 3e-83 | KJ728337.1 Zea mays clone pUT6618 MADS transcription factor (MADS49) mRNA, partial cds. |