PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g08260.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 309aa    MW: 34232 Da    PI: 6.4614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g08260.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09125172455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Zjn_sc00008.1.g08260.1.sm.mk 125 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 172
                                   8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17119188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-11119176No hitNo description
PROSITE profilePS5088815.656121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16121186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6125172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-10127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MASFPRLPQQ MEHGHTNASH SLPSYFFYHH GGAGTADSAI PEDASMETSS VVLDTSPQRT  60
ASVDKKRKPG EDGASHCSAH SKNWKEESKK RGGKRERNRK EEMEEEEAPK GYIHVRARRG  120
QATDSHSLAE RVRRERISER MRVLQALVPG CDKVTGKALI LDEIINYVQS LQNQVEFLSM  180
RIASLSPVLY GFGMDSDAFG DQTQKIEGML HHHHEALAMP ASILNRAPPQ SIMVTSTSTS  240
SASYEVHGDG GISFHQDPIP NHCDPAHEAD GPARSNNLQD GGSYIVQTVG DVPRQELFDQ  300
VEEIILRWS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803717.11e-137transcription factor bHLH137-like
TrEMBLA0A2S3H1M21e-135A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7EUH41e-135A0A2T7EUH4_9POAL; Uncharacterized protein
STRINGPavir.J05063.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-37bHLH family protein