PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g07440.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 255aa    MW: 27353.7 Da    PI: 6.6885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g07440.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.64e-33121042103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k+y ++ed+ ++ +i w + +nsf+v d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Zjn_sc00008.1.g07440.1.am.mk  12 FVWKTYMMVEDPGTDGIIGWGRANNSFIVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 83 
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h sF +g+ +ll++i r+ s+
  Zjn_sc00008.1.g07440.1.am.mk  84 HASFLRGQAHLLRNIVRRGSS 104
                                   *****************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.7E-518101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-339101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.4E-379101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2812101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAASGGGAAA PFVWKTYMMV EDPGTDGIIG WGRANNSFIV ADPFVFSQTL LPAHFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFAHASFLRG QAHLLRNIVR RGSSAGNGGG KRAKDALPAA  120
DGDDMAMVAT EVVRLKQEQR AIDDRVASMW RRVQETERRP KQMLAFLLKV VGDRDRLHRL  180
VGDAAAAPDA RGNEAAAEVG GEKRARLLLD GDVGAFGPDA ADFAGFYGGG EDTLGDVAVD  240
AGGGCSFAFG VDTGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25510117129Heat shock factor protein 1
5d5v_B2e-25510117129Heat shock factor protein 1
5d5v_D2e-25510117129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9597410.0EU959741.1 Zea mays clone 219739 heat shock factor protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.11e-133heat stress transcription factor C-2b
SwissprotQ0DBL61e-116HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0A9DRA11e-136A0A0A9DRA1_ARUDO; Uncharacterized protein
STRINGGRMZM2G118047_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-65heat shock transcription factor C1