PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g05290.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 262aa MW: 26608.1 Da PI: 10.3742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g05290.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.1	0.00018	211	230	12	31
HHHHHHHHHHHHHCTSCCC. CS HLH 12 RRdriNsafeeLrellPkas 31 RR++iN ++e L+el+P ++ Zjn_sc00008.1.g05290.1.am.mk 211 RREKINARMELLKELVPGCM 230 9****************874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.00101	189	229	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.2E-4	191	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
LPPPSPSPTS QTQPVPASAA PMRHTSPPPP QEFPVSGAEI QALIPASAAG PSSLSTTTAS 60 AGGGGGTRAS FTALLGLPTS QAMELLLPRV APAPAPAFPT DPHLVDRAAH FSAFASPAPS 120 SPSPITTPPP PPPPPAPSAT NAKRKADPAD RSSKGKAAKK GKTAVDENKP AGGDGEDEKP 180 AYVHVRARRG QATDSHSLAE RVSSPPLLFA RREKINARME LLKELVPGCM HLASPGEGMG 240 FASRLWLSGQ NVAAALKVAG DG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	3e-52	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347160.1	1e-56	uncharacterized protein LOC100273300
Swissprot	Q8VZ02	2e-25	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1D6P4V3	2e-55	A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRING	GRMZM2G378653_P02	5e-60	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP62070	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-18	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]