PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g04840.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 290aa    MW: 32067 Da    PI: 10.5294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g04840.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-12301081798
                                   E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                            B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                   ++p +fa++ gg+  +   + l ++ g++W+  l++   +++g+  l +GW eFv a+g+ +g +vvF+l+    +  +v+
  Zjn_sc00008.1.g04840.1.sm.mk  30 RVPAEFAARLGGD--G-GLVLLVSPFGKVWRTALRHegGGNRGAWQLVEGWPEFVAAHGVAAGWSVVFRLECAGVA--TVR 105
                                   6899***999988..3.3799*************995544444588999********************9764444..676 PP

                                   EE- CS
                            B3  96 vfr 98 
                                   +f+
  Zjn_sc00008.1.g04840.1.sm.mk 106 AFD 108
                                   665 PP
2B3391.4e-121402161090
                                   HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                            B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                         + +p kf++eh  + ++++s+  ++ ++ g+ W+v l  ++ + +++ ++GW++F + ++L e+ ++vF+++g++
  Zjn_sc00008.1.g04840.1.sm.mk 140 LE---KMKMPDKFVQEHltE-SSPSSQNAIIFSRLGKFWRVDL--ERAQMGVLRGEGWSRFLRVHDLSERNILVFRYEGNM 214
                                   33...3679*********54.55678899999***********..9**999**************************9987 PP

                                   EE CS
                            B3  89 ef 90 
                                    f
  Zjn_sc00008.1.g04840.1.sm.mk 215 VF 216
                                   76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.9E-713110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-1215108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1216108IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-1030108IPR003340B3 DNA binding domain
PROSITE profilePS508639.93946110IPR003340B3 DNA binding domain
CDDcd100172.08E-653108No hitNo description
SuperFamilySSF1019363.14E-14127225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-15127222IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.574128224IPR003340B3 DNA binding domain
CDDcd100175.65E-10129216No hitNo description
SMARTSM010197.5E-7131219IPR003340B3 DNA binding domain
PfamPF023626.8E-10141216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MALSMHRARL KYAAALLSPS CRHKLPSVQR VPAEFAARLG GDGGLVLLVS PFGKVWRTAL  60
RHEGGGNRGA WQLVEGWPEF VAAHGVAAGW SVVFRLECAG VATVRAFDGA DCLARFCTPL  120
EGTMVKDRPR FFRLLRPEDL EKMKMPDKFV QEHLTESSPS SQNAIIFSRL GKFWRVDLER  180
AQMGVLRGEG WSRFLRVHDL SERNILVFRY EGNMVFSAEA FLQDGRLKEY EAAAGTHITD  240
DIIGPSKPQG SQPVLDSAKH PGGSPVKKKR KRKAGTTSQV QNGLCRLSAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272KKKRKRK
2267272KKRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305580.11e-100putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL74e-85Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A194YKE14e-98A0A194YKE1_SORBI; Uncharacterized protein
STRINGOGLUM06G22930.11e-86(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.12e-08VERDANDI