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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g04450.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 403aa MW: 44833.5 Da PI: 8.6086 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 98 | 147 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Zjn_sc00008.1.g04450.1.sm.mk 98 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 147 78*******************......55************************998 PP | |||||||
2 | AP2 | 37 | 8.2e-12 | 195 | 245 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+++k g+W+A+I +k+++lg + t+ eAa+ +++a+ k +g Zjn_sc00008.1.g04450.1.sm.mk 195 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYETEMEAAQVYDKAAIKCFG 245 789*******.7******77733....25**********77**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-16 | 98 | 156 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-10 | 98 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-30 | 99 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.09E-11 | 99 | 154 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 99 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 99 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-16 | 195 | 253 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.85E-23 | 195 | 255 | No hit | No description |
Pfam | PF00847 | 5.7E-7 | 195 | 243 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.908 | 196 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-31 | 196 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 196 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-5 | 197 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-5 | 235 | 255 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MADAKRAFHF DGVDDGVARE EGGARRGEGA GMIFGFQVVP GPTAVTQQLF PAPVPARQHQ 60 QQVMEQCHAV AAAATAAAEP WARSSLRKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG 120 KQVYLGGFDT AQAAARAYDQ AAIKFRGMSA DINFSLDDYK DDIKKHCSCQ MNSFSKEEFI 180 QVLRRQGAGF VRGSSRFRGV TQHKCGKWEA RIGQLMGKKY VYLGLYETEM EAAQVYDKAA 240 IKCFGKEAVT NFDPHAYHSE RQLQSWDGEL DLELSLGCAS GERGGDHTTV AGEAFNPTPG 300 RQRTSLTKNH GHRLCFMPEN QLELPEEDET IAGYLHRSIR ATPLPSPATP PVRGALGLQY 360 HRVDDLAPFP SSRSTAMHML QMLARYVQNA APVPFDMSCD YAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642711.1 | 1e-132 | ethylene-responsive transcription factor RAP2-7 | ||||
Swissprot | A0A0N7KMH0 | 1e-133 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | A0A3L6RYR2 | 1e-136 | A0A3L6RYR2_PANMI; Uncharacterized protein | ||||
STRING | LPERR06G18460.1 | 1e-134 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11821 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 2e-79 | AP2 family protein |
Publications ? help Back to Top | |||
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