PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g02540.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 531aa    MW: 58471.4 Da    PI: 7.2546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g02540.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-063181126
                                    GTS--TTTTT-SS-SS CS
                         zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                                    ++G+C+ G++C++ H+
  Zjn_sc00008.1.g02540.1.am.mkhc  3 KMGFCPNGPTCRYKHV 18
                                    78*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.206120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088257.562129264IPR007275YTH domain
PfamPF041462.2E-44129263IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MYKMGFCPNG PTCRYKHVKL PGPPPPVEEV LQKILQFRSF NKFGQHRNNF NQQAERPHPP  60
QGSGLPNQNS TDHASAPVQP AGVQQAQIMN QQTPQQQQKP SATDLVQGVS NGLSNQAARV  120
ATPLPQGPSR YFIVKSCNRE NLEISVQQGI WATQRSNEAK LNEAFESIEN VILIFSINRT  180
RNFQGCAKMT SRIGGYIGGG NWKSAHGTAH YGRNFSVQWL KLCELSFQKT HHLRNPYNDN  240
LPVKISRDCQ ELEPFIGEQL ASLLYLEPDS ELTMLVAAEA KREEEKAKGV SADEAADNQD  300
IVLFDDNEEE EEESEEEDES NGQESQGRGR GRGMMWPPQM PMPRGMGPMA GGRGFPPNMM  360
GDGFGFSGGF GMPDPFGMPR GFPPFGGPRF PGDFARAGPM PGMVFPGRLP QPGGPFPMGL  420
DMMMGPGRGP MMGAMGMGPG RPNRPMGMAP FMPPPPPNNR VAKREQRRPG GDRNERYETS  480
SEQGSRGHEN AGNSIADGGR SQSGDRYGRS NLRDDDSESE EETAPRRSRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A1e-103114291218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B1e-103114291218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C1e-103114291218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D1e-103114291218030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657248.20.0PREDICTED: zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLJ3MGU60.0J3MGU6_ORYBR; Uncharacterized protein
STRINGOB06G32400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428