PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g02310.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 184aa    MW: 20066.3 Da    PI: 11.4257
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g02310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-06106131127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   ykt+lC+ ++  G C++ ++C FaHg+
  Zjn_sc00008.1.g02310.1.am.mk 106 YKTKLCSLWRGRGGCPR-PNCGFAHGE 131
                                   9****************.*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-13100138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6104135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.657105132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MECVPLQAGQ SGRCGLHSAV LPRDQKRPNG TPNGVAADMD DESLALDTMH RLHNILVFAI  60
SVRRPRLGFS SAAVSRRRRP GTMRDGPRDR VGADASGPPP FRGPAYKTKL CSLWRGRGGC  120
PRPNCGFAHG EAELRRPPPR PSFQPHPRLG KYTAPILISP RCPLLICVAP ISIHAFLVGP  180
FRDL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0186642e-43BT018664.1 Zea mays clone EL01N0510A02.d mRNA sequence.
GenBankBT0402022e-43BT040202.1 Zea mays full-length cDNA clone ZM_BFc0071K03 mRNA, complete cds.
GenBankEU9652322e-43EU965232.1 Zea mays clone 284655 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.