PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g00850.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

DBB

Protein Properties

Length: 385aa MW: 40596.3 Da PI: 4.7406

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g00850.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	6.9e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ ++ +++ C ++ lC C H+ H+++pl Zjn_sc00008.1.g00850.1.am.mk 4 NCDVCGGEPAAVLCCADEAALCSACDRRVHRAnklagkHRRIPL 47 7*****************************77999999999886 PP
2	zf-B_box	23.6	1.1e-07	59	98	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e + fC +++ lC+dC + +H+ H Zjn_sc00008.1.g00850.1.am.mk 59 PLCDVCKERRGLVFCVEDRAILCADCDDPIHSAndltakH 98 78*****************************655555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.139	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	6.4E-10	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.3E-6	4	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.07E-7	5	47	No hit	No description
PROSITE profile	PS50119	9.186	56	103	IPR000315	B-box-type zinc finger
SMART	SM00336	3.6E-14	56	103	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.2E-5	59	99	IPR000315	B-box-type zinc finger
CDD	cd00021	1.25E-8	59	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MRVNCDVCGG EPAAVLCCAD EAALCSACDR RVHRANKLAG KHRRIPLLHP SSDDGATGPL 60 CDVCKERRGL VFCVEDRAIL CADCDDPIHS ANDLTAKHSR FLLVGAKLSA AEAPSSPDCG 120 GGESDGGVAA ACAQEQDSST DRSSVLERGD NHNGSGGGAM ISDYLTNICP GWRVDDLLVD 180 DSPFSATAPG RDEQVPSMDA DLFDVVAGRS EKRGSGAWGP SWTSTGDLGF EEVPTAPTAA 240 GPGKQGRVRE TFWNNNMDND SDAFAVPEIT PPPAKKARPS SFCWEISTVG SCSCSKMVRV 300 TGWDVSQDTV LTHVAMEPKR VKAPLGDPRR VPGHTRSPPE LPRSSALSSL FFSLTESLDV 360 GWALASGEIA SGEGRLMPIP TTELS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MRVNCDVCGG EPAAVLCCAD EAALCSACDR RVHRANKLAG KHRRIPLLHP SSDDGATGPL  60
CDVCKERRGL VFCVEDRAIL CADCDDPIHS ANDLTAKHSR FLLVGAKLSA AEAPSSPDCG  120
GGESDGGVAA ACAQEQDSST DRSSVLERGD NHNGSGGGAM ISDYLTNICP GWRVDDLLVD  180
DSPFSATAPG RDEQVPSMDA DLFDVVAGRS EKRGSGAWGP SWTSTGDLGF EEVPTAPTAA  240
GPGKQGRVRE TFWNNNMDND SDAFAVPEIT PPPAKKARPS SFCWEISTVG SCSCSKMVRV  300
TGWDVSQDTV LTHVAMEPKR VKAPLGDPRR VPGHTRSPPE LPRSSALSSL FFSLTESLDV  360
GWALASGEIA SGEGRLMPIP TTELS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363277	1e-100	AK363277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013O17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812143.1	1e-111	B-box zinc finger protein 20-like
TrEMBL	A0A2S3HGD1	1e-110	A0A2S3HGD1_9POAL; Uncharacterized protein
STRING	Si006993m	1e-105	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12100	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	8e-50	salt tolerance homolog2