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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g00460.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 482aa MW: 53514.9 Da PI: 6.8328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.2e-11 | 317 | 359 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Zjn_sc00008.1.g00460.1.am.mk 317 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 359 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.55E-5 | 303 | 364 | No hit | No description |
PROSITE profile | PS50888 | 15.269 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-16 | 314 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-12 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-9 | 317 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-15 | 317 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.21E-5 | 410 | 448 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MAVFCRLPFE ALDACDQQPS DPRAIRHTRT QKDNQRSRRS TLTASRDGAH SLTWRATLMS 60 SQRAASWHRI DRITDVPSTQ KDPWTMATRE SERRRKKKDT WGTTRGHVGH PLQAFVPICV 120 CLSSPLASPP LLALSQEKKP HLLFFILLEE KRGQGKQLSK RGEEMELDEQ AFLEEILSLR 180 RDAWECNAVG DFFSPATAAM DCSFQERHQP PPSVSVLPTF TASYDHQQPP PAPGFDCLSE 240 VYGAAAAFGG PNEGDYGGEM GFLDVIEPKA PLVEGAGLGV CKVEPGLQVD SGGAFSAPAA 300 PVSKKKRVEG MPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL 360 ERIKQLQEEI EQEQHEAPGV LSVFQELNPN EMVARNTPKF EVERKEGGET RVEIYCAAKP 420 GLLLSTVSTL DTLGLDIQQA VVSCFNDFGM HASCSEVQRE MISADIIKQE LFKNAGYGGG 480 CL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 98 | RRKKKD |
2 | 304 | 324 | KKRVEGMPSKNLMAERRRRKR |
3 | 318 | 325 | ERRRRKRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100643 | 0.0 | FP100643.1 Phyllostachys edulis cDNA clone: bphyst017o19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142220.1 | 1e-171 | uncharacterized LOC100274388 | ||||
TrEMBL | A0A3L6S127 | 1e-176 | A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2 | ||||
STRING | Sb10g030470.1 | 1e-166 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-47 | beta HLH protein 93 |