PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g00230.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 432aa    MW: 46766.2 Da    PI: 7.7097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g00230.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17138182147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT+eE++++++avk++G   W+ I +++g ++t+ q++s+ qk+
  Zjn_sc00008.1.g00230.1.am.mkhc 138 REKWTEEEHDKFLEAVKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 182
                                     789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-11132184IPR009057Homeodomain-like
PROSITE profilePS5129422.722133187IPR017930Myb domain
SuperFamilySSF466891.2E-15133186IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-16136185IPR006447Myb domain, plants
SMARTSM007178.8E-15137185IPR001005SANT/Myb domain
PfamPF002492.3E-15138181IPR001005SANT/Myb domain
CDDcd001671.03E-11140183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGCTSDVARF PPHPFALPPK ICRSRHAFIF FLSPFAAAVA RLLLPPLFCV APSSAIILSC  60
SPESISRGVG RLRFELWDRL IMATVALVEE RDGVESSSLR PPLDVAKPPV VDGAMQFKEG  120
MDGYPVKVRK PYKITKQREK WTEEEHDKFL EAVKLYGRSW RQIQEHIGTK TAVQIRSHAQ  180
KFFSKVVREP GAGDMIEIPP PRPKRKPLHP YPRKCANSST RADPKLGPVS PSSGSYQENG  240
SPVSVLSAVQ SDAFGSSVSN PSTGCTSPAS SDGGNNGLVM LNGEEILPSN QAEMDLSPKE  300
VKQDNSDGDL SEEDSSRKAS LKLFGKTLII PDPKKLCSLD GGPQSSAKEM FEAAFIGGVA  360
TYAAANEWLL QRHSFPFCAG ESETGKSPSA ESSSDSMGGV QTTMLTNGEV AKDETKLQRI  420
SVDKGICAIQ EV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.11e-142uncharacterized protein LOC101785788
TrEMBLK3XWZ91e-141K3XWZ9_SETIT; Uncharacterized protein
STRINGSi006457m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-38MYB_related family protein