PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g12000.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 500aa    MW: 54983.1 Da    PI: 10.2856
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g12000.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-17271318148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+WT+eEd +lv  ++++G  +W++ +r  g+ R++k+c++rw +yl
  Zjn_sc00007.1.g12000.1.am.mk 271 RGPWTPEEDRILVAHIERHGHSNWRALPRLAGLLRCGKSCRLRWINYL 318
                                   89******************************99************97 PP
2Myb_DNA-binding50.83.8e-16324369148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zjn_sc00007.1.g12000.1.am.mk 324 RGNFTREEEDAIIQLHNMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 369
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-24262321IPR009057Homeodomain-like
PROSITE profilePS5129416.247266318IPR017930Myb domain
SuperFamilySSF466892.27E-30267365IPR009057Homeodomain-like
SMARTSM007179.7E-14270320IPR001005SANT/Myb domain
PfamPF002491.9E-14271318IPR001005SANT/Myb domain
CDDcd001672.71E-11273318No hitNo description
PROSITE profilePS5129425.543319373IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-26322373IPR009057Homeodomain-like
SMARTSM007174.0E-15323371IPR001005SANT/Myb domain
PfamPF002495.2E-15324369IPR001005SANT/Myb domain
CDDcd001672.53E-11326369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MITNQTSEPE SWAGASSPRP SSVEALSAAS AYGARRWRRG ASKARRFVDS ARPDQPQSIH  60
LRDDTDGPVD PVRNFPHAGR ASLPSRPRRE NRSERIKVRC RTLHPALIKS MTSFSPTHPC  120
LAAPAQKAAT GTDYRLQTNH RGIKKNDRSS VAAGIHPNEL NKLERFGITI KLLFRFLLIL  180
SRSWPNPSPS PSFLPSTNLP DLTTFSAARP FFSAAATLVA SCRAPGINSP ALAPSPPQQP  240
AAHTIENDRA SSVLRPLMGR APCCEKMGLK RGPWTPEEDR ILVAHIERHG HSNWRALPRL  300
AGLLRCGKSC RLRWINYLRP DIKRGNFTRE EEDAIIQLHN MLGNRWSAIA ARLPGRTDNE  360
IKNVWHTHLK KRLEPKAPNA AAPKRRAKKQ QQPNQVVVLD GPTTAPVSPE QSLSTASQSA  420
ATTTDCSAAS STLENADSFT SEEFMIDDSF WAETLAMSTV VDSAESSMDD GFGASSGDDT  480
DFWLNVFMQA GGVETYLPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-262693745109B-MYB
1h8a_C1e-2526937325128MYB TRANSFORMING PROTEIN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734711e-127EU973471.1 Zea mays clone 399373 myb-related protein Myb4 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-75myb domain protein 15