PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g10900.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 657aa    MW: 70324 Da    PI: 10.3252
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g10900.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19575609135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Zjn_sc00007.1.g10900.1.am.mk 575 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 609
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.295569605IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-18569623IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14572632No hitNo description
Gene3DG3DSA:3.30.50.103.4E-15573607IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.74E-13574631No hitNo description
PfamPF003205.1E-17575609IPR000679Zinc finger, GATA-type
PROSITE patternPS003440575600IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MRMRHGHSRP VTCWCARHDG LVRTGWAGIG SIDEVRNCAV TACRGGDIIR HRRWLNKRCR  60
LPGKDKTTPS PSPHGDYVKT ALEETEEPQL CPFLGLNVGR QQGQGAVPPS LVGAGVLVTS  120
PAGPGQIRRH NAQARARECR QDWCQAARHA KASTRAACGD LSLPGMVSRE VDSVRHQRLT  180
PATRRALPAP QRQRINRTRH PARGATSSAR PMTPSARAHA TNRAANRRSE DAPAGKVPRQ  240
NNLRNGTRSS LPPLLPTSSL PPAPFHPLLL YVRLLQPCSS AAALAMALFL AHHHGSLVET  300
EGRMGALRSS LLPCQVAEEV AAAGAAGPAA WCAGERGVGL FAEGFSVEDL LDLEELCEVD  360
KDVAAELGEA APSSAVEEDK SSDSHGSSSV VSYELMPLPP PVIDLPAHDA EELEWVSRIM  420
DDSLAELPPA SSFALRRQQE PTVSRMVPVP TPTICALSTE ALVPVKAKRS KRLRGSVWSL  480
SGAAPLSDST SSSSTTTTSS CSSSSASFPP LLLLDSSPFA AAHLLEQAPR SKKSKHGKNG  540
KSKLKKRGRK PKHQQPSQFS GADATAPVAS GDRRCSHCGV QKTPQWRAGP EGAKTLCNAC  600
GVRYKSGRLL PEYRPACSPT FVSSIHSNSH RKVLEMRRKK EGLPLVPAAS TPAVTSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798828.11e-130GATA transcription factor 6-like
TrEMBLA0A2T7F9Q41e-130A0A2T7F9Q4_9POAL; Uncharacterized protein
STRINGSi017219m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-38GATA transcription factor 5