PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g10760.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36564.7 Da    PI: 7.4441
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g10760.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18143196456
                                     -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Zjn_sc00007.1.g10760.1.sm.mkhc 143 KRRFTEEQVRSLETTFHArRAKLEPKEKAELARELGLQPRQVAIWFQNKRARWR 196
                                     458**************8899********************************9 PP
2HD-ZIP_I/II120.77.6e-39141234193
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78 
                                     e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal+++ e
  Zjn_sc00007.1.g10760.1.sm.mkhc 141 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARYDALRDRVE 219
                                     69*****************9999******************************************************** PP

                     HD-ZIP_I/II  79 rLekeveeLreelke 93 
                                     +L +e+++L+++l++
  Zjn_sc00007.1.g10760.1.sm.mkhc 220 ALAQEKAALAAQLDD 234
                                     **********99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.1E-17133200IPR009057Homeodomain-like
PROSITE profilePS5007117.248137198IPR001356Homeobox domain
SMARTSM003892.5E-17140202IPR001356Homeobox domain
CDDcd000861.58E-15142199No hitNo description
Gene3DG3DSA:1.10.10.601.0E-18143204IPR009057Homeodomain-like
PfamPF000461.2E-15143196IPR001356Homeobox domain
PRINTSPR000319.4E-7169178IPR000047Helix-turn-helix motif
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PRINTSPR000319.4E-7178194IPR000047Helix-turn-helix motif
PfamPF021832.0E-11198237IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRSELNSEQR PLTARRTQRD NGACRLGACH VFREKLSPPP GDHIDVDAAR IRRGCASARS  60
TGIRSRALCP ERHSSKPTAT RSLLSLGATT DRYGSVFEAM ERDCQFLAPP HQYEDQLLHQ  120
LMMVGEQDPA GAAGVRAGGG ERKRRFTEEQ VRSLETTFHA RRAKLEPKEK AELARELGLQ  180
PRQVAIWFQN KRARWRSKQL EHDYADLRAR YDALRDRVEA LAQEKAALAA QLDDLKLKGR  240
LNERRDQSCS CDVDNGGTTF EVDDKRKNNS NSVSSPDDGA VAPAGATSED STAGGYYDDV  300
AYAGLSDPFC NPPELWDAWP LLEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636854e-95AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876044e-95AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475154e-95EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151825.18e-92homeobox-leucine zipper protein ATHB-6
SwissprotA2X7U14e-72HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A1D6HER16e-91A0A1D6HER1_MAIZE; Homeobox-leucine zipper protein ATHB-6
STRINGGRMZM2G117164_P011e-91(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-20homeobox 7