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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g10280.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 29801.9 Da PI: 4.4534 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 74 | 122 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f+t+e+Aa+a++ a+++++g Zjn_sc00007.1.g10280.1.am.mk 74 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 122 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.3E-13 | 72 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-32 | 73 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-36 | 73 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 73 | 130 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.222 | 73 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 74 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.38E-31 | 74 | 130 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSLLEAASCA RCPAVMEEER ALSPVSDASV DTCSHGSSSS FGPGSLVASP SFDESSGAAS 60 SRKRPRRELK RPAYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFDTPEMAA RAHDVAALAI 120 KGRAAHLNFP GIAHELPRAA SAAPEDVRAA AALAAAMESA APAASSDSSN GSAGCVEDDE 180 ATPSSAATVG SIDSSHGAEN DVDEEATASI AAPAACSSSS HGACYDEDEE AAPSSEHATP 240 LDSHVVDLAL FDLPDVLREF GFALPPLTPC CDDLCWDEPL LLWEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 74 | 130 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970180 | 1e-105 | EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646011.1 | 2e-95 | ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A1D6HF21 | 4e-94 | A0A1D6HF21_MAIZE; Ethylene-responsive transcription factor ERF035 | ||||
STRING | GRMZM2G041839_P01 | 2e-92 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 9e-39 | ERF family protein |