PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g09520.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 311aa MW: 34213.9 Da PI: 10.7119

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g09520.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.2	3.7e-28	19	69	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWt+eLH+ Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+ Zjn_sc00007.1.g09520.1.sm.mk 19 PRLRWTTELHHGFVRAVDCLGGPDKATPKLILQLMDVRGLTIAHVKSHLQR 69 8*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-26	15	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.585	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	8.78E-14	17	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-20	19	69	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGGGRNGAAT RRYNRSKVPR LRWTTELHHG FVRAVDCLGG PDKATPKLIL QLMDVRGLTI 60 AHVKSHLQRC NHGKQQYIRS THSPLMREDA PKSSCAHPRK GFSFPLPLSF LTFQHWSIES 120 KRSPSSLGCM FLPPWMNRAK AGAEAAAATH ESMLQRNTDM GAPGTQRCSD DCMQAVSMGR 180 SRRWTDQGIG WQRHAAASST LQALGFWVRG YAPFKISRPI VNHISPVARQ VSSKYISLED 240 RRFMFSIRDE PAERRSPSQS LDPEAVDAIT SWHSVSSVVG VPSPLPSSTS FSGCSGPSGG 300 CFAGQKEALN I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-15	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799208.1	4e-90	uncharacterized protein LOC112879085
TrEMBL	A0A3L6QKA4	3e-80	A0A3L6QKA4_PANMI; Uncharacterized protein
STRING	Pavir.Ab02674.1.p	1e-86	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	8e-26	G2-like family protein