PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g09250.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 237aa MW: 24525.9 Da PI: 4.6842

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g09250.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.1	3.3e-16	65	112	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p+ + r++lg++ tae+Aa+a++ a+++l+g Zjn_sc00007.1.g09250.1.sm.mk 65 YRGIR-CR-SGKWVSEIREPR----KaSRIWLGTYPTAEMAAAAYDVAARALRG 112 9*9.55.6*****94....36***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	17.846	64	121	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-15	64	115	IPR016177	DNA-binding domain
SMART	SM00380	7.2E-21	64	123	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-8	65	112	IPR001471	AP2/ERF domain
CDD	cd00018	1.17E-12	65	98	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.9E-22	65	115	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAEQQSPVSS PPDTQAPPQQ GPGPRHPSSV VQAGDATTGV STAPTAAATS SGEPSPRSSG 60 KHAFYRGIRC RSGKWVSEIR EPRKASRIWL GTYPTAEMAA AAYDVAARAL RGTDAAPASA 120 SPADIRAAAA AAAAAAAQLE HPHGGESPDA AAPALVAPEQ RHGVTSSATA DASSCAPQQE 180 FGNDEFMDEE AIFEMPQLLR NMAAGMMMSP PRLSPYTSDE SPDPSEAGES LWSYRDP

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098896	4e-88	FP098896.1 Phyllostachys edulis cDNA clone: bphylf043a21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953436.1	7e-80	ethylene-responsive transcription factor ERF027
Refseq	XP_025826401.1	7e-80	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	7e-41	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A368PPP7	2e-79	A0A368PPP7_SETIT; Uncharacterized protein
TrEMBL	A0A3B6NT60	4e-79	A0A3B6NT60_WHEAT; Uncharacterized protein
TrEMBL	A0A446VJE3	4e-79	A0A446VJE3_TRITD; Uncharacterized protein
TrEMBL	A0A446VJJ2	3e-79	A0A446VJJ2_TRITD; Uncharacterized protein
STRING	Si018039m	3e-79	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3654	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-27	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]