PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g09230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 326aa    MW: 35405.7 Da    PI: 8.7375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g09230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-18154204155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + +kGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  Zjn_sc00007.1.g09230.1.am.mk 154 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 204
                                   579****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-13154204IPR001471AP2/ERF domain
SMARTSM003802.6E-27155218IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-20155213IPR016177DNA-binding domain
PROSITE profilePS5103221.588155212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-29155214IPR001471AP2/ERF domain
PRINTSPR003671.6E-7156167IPR001471AP2/ERF domain
CDDcd000181.57E-28156214No hitNo description
PRINTSPR003671.6E-7178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPPRCARPHR PPRPRELQLF PTQLRPASPN PSPPSSVPDP SQVALPGWRL PCRTALEQGT  60
RPRRTPRGKL YNPATFPSQI QTTPSSLASL AAPTLHSTHQ IAMDVGAFSS DYSSGTPSPV  120
GGGDDDGSPS YMTVSSAPPK RRAGRTKFKE TRHPVFKGVR RRNPGRWVCE VREPHGKQRI  180
WLGTFETAEM AARAHDVAAL ALRGRGACLN FADSPRLLRV PPVGAGHDEI RRAAAEAAEQ  240
FRPALDQGNV AVEEPITTMP DLFSSESTQS ADHHPYCMVD DRFDFGMQGY LDMAQGMLID  300
PPPMGGSSSG NGGDDNDGGE VRLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-114dehydration-responsive element-binding protein 1G
SwissprotQ6EP772e-98DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLK3YVG61e-113K3YVG6_SETIT; Uncharacterized protein
STRINGSi018262m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.14e-34C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]