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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g08830.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 549aa MW: 59222.8 Da PI: 10.2522 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.6e-16 | 165 | 209 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+ ++++a +++G W++I +++g ++t+ q++s+ qk+ Zjn_sc00007.1.g08830.1.sm.mkhc 165 REKWTEDEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 209 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-15 | 159 | 212 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.732 | 160 | 214 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.3E-16 | 163 | 212 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-12 | 164 | 212 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 165 | 208 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-9 | 165 | 205 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-9 | 167 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MPRKLWPEEE EKDGRKQKNP VRRGTLVRAL FLRPSTPLSV PLPLSSPVQP ASLPLLITLP 60 FLARPHQRGE PARGRDICRS VAGLFGRDIW GRLFRATSAT SRSTGMTCLE RKTMATDENA 120 VGDRAAGENA VDHGNNHPGP GGMDLAGDGD HVPKTRKPYT ITKQREKWTE DEHRRFLEAL 180 QLHGRAWRRI QEHIGTKTAV QIRSHAQKFF TKVVTVVRES SGSNGGSGAG APSIQIPPPR 240 PKRKPAHPYP RKVDGAAKKH APTLKRLEKP PVRRMQSLRE QDDGSPTSVL TAAQTVLRAD 300 ALDGAFSNTW SGGDRSRAPS VVGSDEHGNG GGSSAFCDAK DCAGSEASVF KLFGKKVAVK 360 DSYQHLQNGR NLKIDVSPAC VTKPTGNAIP CAGANSWNHL WPGNMQQVMY FLPGPGSFPA 420 QSVMPWLGYN GSMPCSLFYP QAVTSNQEHH IPSESPDPEG SLTGSNTASS VAPASAAQNS 480 DAVESRAEQG KASESVTKPA VKRLLKCPSS ASTNRRGFMP YKRCAAESDA PRSVAPGEEA 540 DGELTRLCL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814514.1 | 1e-173 | protein REVEILLE 1-like | ||||
TrEMBL | A0A1E5VGC7 | 1e-171 | A0A1E5VGC7_9POAL; Protein LHY (Fragment) | ||||
TrEMBL | A0A2S3GS63 | 1e-171 | A0A2S3GS63_9POAL; Uncharacterized protein | ||||
STRING | Si017289m | 1e-157 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 1e-31 | MYB_related family protein |