PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g08130.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 780aa MW: 85788.6 Da PI: 10.3583

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g08130.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.6	2.9e-28	164	213	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Zjn_sc00007.1.g08130.1.am.mk 164 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 213 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-24	162	213	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.02E-12	162	213	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-20	164	214	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-5	165	213	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MELFPAHPDL QLQISPPVSK PMDLGFWKRA LDSTPVATST PAATAAATTS PSSMAIASPA 60 PTGVGGFHPG AGAVHHQGAL PFVHHTQPIL PGSSGLRDLA SMRPIRGIPV YNASQAPLPF 120 LQSHPHSHQQ HCYDAIVGGV AWSRSPKAAL RLAGAPVKRG ARAPRMRWTT SLHARFVHAV 180 ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQLSTKHAM HAIKSHTGEE EAAIEFSRKL 240 HGRAGIRHPH HTRTTPQQRG RSIDTHTAQK EMYRTIKTTD HRPASASCYD ISDDNQFDVS 300 NTTSRSESSP QQSNPDNANE HGSSMCALWS NSSMRGAWFQ LDKSSKDAAP SDIKSFEVQL 360 IVAVPSHRDA DQRQKETEPG LQPRTDITHR AVDTSTGPTR KKDGLAGYLW RSNRVVKWLP 420 LPLLLYDLTV VVACTMANTS THAEADRKST RRVDPAIRPM HQPPCYGHRA CTNGRVRAIA 480 RCNEEGGGGG WDADGWTYAP PCTRPAAEGR DQTEMEEEEE KLRHAHAYTE ALGRSALVRA 540 SASFCESASE QARRVRTCPW GRDATAPLAT ARLACFEFAL TLKQKYFIIV FAGPLRSRPG 600 SNSREDTREE RDVSSRQAKT LWDGSSGWRR AEQSRAVSSR ASLWPRSRRL KEACSVGGQW 660 TEIRIRPLRR RSDHTSSYAF ACPPLYASPG TRGPNPLPPP VLSAALPRPF GRIDRLVRRP 720 AFGRWRRRSE GASSFQFLVD SHRSAPRERR GDAAHRLACG IAEMGKGGDL WDDSALVNAF

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MELFPAHPDL QLQISPPVSK PMDLGFWKRA LDSTPVATST PAATAAATTS PSSMAIASPA  60
PTGVGGFHPG AGAVHHQGAL PFVHHTQPIL PGSSGLRDLA SMRPIRGIPV YNASQAPLPF  120
LQSHPHSHQQ HCYDAIVGGV AWSRSPKAAL RLAGAPVKRG ARAPRMRWTT SLHARFVHAV  180
ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQLSTKHAM HAIKSHTGEE EAAIEFSRKL  240
HGRAGIRHPH HTRTTPQQRG RSIDTHTAQK EMYRTIKTTD HRPASASCYD ISDDNQFDVS  300
NTTSRSESSP QQSNPDNANE HGSSMCALWS NSSMRGAWFQ LDKSSKDAAP SDIKSFEVQL  360
IVAVPSHRDA DQRQKETEPG LQPRTDITHR AVDTSTGPTR KKDGLAGYLW RSNRVVKWLP  420
LPLLLYDLTV VVACTMANTS THAEADRKST RRVDPAIRPM HQPPCYGHRA CTNGRVRAIA  480
RCNEEGGGGG WDADGWTYAP PCTRPAAEGR DQTEMEEEEE KLRHAHAYTE ALGRSALVRA  540
SASFCESASE QARRVRTCPW GRDATAPLAT ARLACFEFAL TLKQKYFIIV FAGPLRSRPG  600
SNSREDTREE RDVSSRQAKT LWDGSSGWRR AEQSRAVSSR ASLWPRSRRL KEACSVGGQW  660
TEIRIRPLRR RSDHTSSYAF ACPPLYASPG TRGPNPLPPP VLSAALPRPF GRIDRLVRRP  720
AFGRWRRRSE GASSFQFLVD SHRSAPRERR GDAAHRLACG IAEMGKGGDL WDDSALVNAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-13	165	213	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-13	165	213	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-13	165	213	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-13	165	213	3	51	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069143	4e-69	BT069143.1 Zea mays full-length cDNA clone ZM_BFb0209N04 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9438	34	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	7e-34	G2-like family protein