PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g07490.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 387aa MW: 42353.3 Da PI: 5.652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g07490.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	179	220	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+el+P + sk Ka +L + ++Y++sLq Zjn_sc00007.1.g07490.1.sm.mk 179 QVRRERISERMRFLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 220 67****************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.91E-8	157	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.6E-12	160	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.131	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0012	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	178	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAQCGGDLLS RRLHQETTVE GLCQGLLDLD EDMFGAMCSA VGYLQEWPDV SGTNLGVAAP 60 DAGNANDDDS CSGGGVRKRK TDSCLDAKVR DLSFFCESDH SDGCKRPRAK QQLISPSDPA 120 CEIAGKGKEE RPKAGTKKKA EVAAGQKTDY IHVRARRGQA TDSHSLAERN SKPNEFNAQV 180 RRERISERMR FLQELVPGCS KVTGKAGMLD EIINYVQSLQ KQVEVLGFHL CFFQLAFSSV 240 LTGQLLPLLL QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CDTAAPPALA LPDGQLQQSC 300 VQMSPMQQVH LHAGSFGFGL EMVVNSPYPL VAADGSNVSC LDLSTAMPVN VNLSIHKDMM 360 LGMELAMQMW YQASDFRYMT DLRQFDT

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAQCGGDLLS RRLHQETTVE GLCQGLLDLD EDMFGAMCSA VGYLQEWPDV SGTNLGVAAP  60
DAGNANDDDS CSGGGVRKRK TDSCLDAKVR DLSFFCESDH SDGCKRPRAK QQLISPSDPA  120
CEIAGKGKEE RPKAGTKKKA EVAAGQKTDY IHVRARRGQA TDSHSLAERN SKPNEFNAQV  180
RRERISERMR FLQELVPGCS KVTGKAGMLD EIINYVQSLQ KQVEVLGFHL CFFQLAFSSV  240
LTGQLLPLLL QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CDTAAPPALA LPDGQLQQSC  300
VQMSPMQQVH LHAGSFGFGL EMVVNSPYPL VAADGSNVSC LDLSTAMPVN VNLSIHKDMM  360
LGMELAMQMW YQASDFRYMT DLRQFDT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083486	4e-58	BT083486.1 Zea mays full-length cDNA clone ZM_BFb0002M11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813679.1	1e-111	transcription factor bHLH49-like
TrEMBL	A0A0A9CZD0	1e-127	A0A0A9CZD0_ARUDO; Uncharacterized protein
STRING	Si017630m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8252	37	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-37	cryptochrome-interacting basic-helix-loop-helix 1