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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zjn_sc00007.1.g06240.1.sm.mk | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | NF-YB | ||||||||
| Protein Properties | Length: 155aa MW: 16778.7 Da PI: 4.5953 | ||||||||
| Description | NF-YB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YB | 78.1 | 1.2e-24 | 20 | 110 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
d+ l + ++r+m+ vl a+ k+s ak++vq c+ efi v +ea+++c++ +r+ ++++d+ +l +lG++ y+e + +
Zjn_sc00007.1.g06240.1.sm.mk 20 DNQLSRSGIARMMRAVLDAQVKVSCPAKNLVQTCAKEFIVAVVDEATKQCHQSDRQMLTPEDIALSLRSLGLNSYIELMGT 100
67788889************************************************************************* PP
NF-YB 86 ylkkyreleg 95
yl++yre+ +
Zjn_sc00007.1.g06240.1.sm.mk 101 YLRRYRETPR 110
******9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 1.5E-24 | 13 | 126 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 4.49E-20 | 20 | 120 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 4.5E-11 | 26 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| PRINTS | PR00615 | 2.1E-5 | 50 | 68 | No hit | No description |
| PRINTS | PR00615 | 2.1E-5 | 69 | 87 | No hit | No description |
| PRINTS | PR00615 | 2.1E-5 | 88 | 106 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 155 aa Download sequence Send to blast |
MACRSGASSK RGGEEEEPSD NQLSRSGIAR MMRAVLDAQV KVSCPAKNLV QTCAKEFIVA 60 VVDEATKQCH QSDRQMLTPE DIALSLRSLG LNSYIELMGT YLRRYRETPR PRDGARESDS 120 TSAPAPAAGD LSDEELLQIL DQAMDDAIGN GNSSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1n1j_A | 2e-16 | 20 | 107 | 6 | 93 | NF-YB |
| 4awl_B | 3e-16 | 20 | 107 | 7 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 3e-16 | 20 | 107 | 7 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP33077 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G09030.1 | 3e-21 | nuclear factor Y, subunit B4 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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