PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g06220.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 500aa MW: 54230.5 Da PI: 9.7689

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g06220.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	111	6.8e-35	33	122	6	95
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++lP+anv+r+m++v+P++ kis ak ++++c++ef++fv++ea++ + +e+r+ti+++d+ a+ lGf+dyv+pl++y Zjn_sc00007.1.g06220.1.am.mk 33 NELPMANVVRLMRQVIPTDVKISGRAKRLTHDCAVEFVAFVGGEAAECAAAEHRRTIAPEDFTRAFERLGFDDYVAPLSTY 113 579**************************************************************************** PP NF-YB 87 lkkyreleg 95 +++yre ++ Zjn_sc00007.1.g06220.1.am.mk 114 IRRYRENHQ 122 ***9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.3E-14	34	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.7E-26	34	123	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-24	35	134	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.7E-7	387	491	IPR009072	Histone-fold
SuperFamily	SSF47113	1.48E-6	387	488	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MERKAKRRAN GSVRDGKRPA PAAGSDDGDG AGNELPMANV VRLMRQVIPT DVKISGRAKR 60 LTHDCAVEFV AFVGGEAAEC AAAEHRRTIA PEDFTRAFER LGFDDYVAPL STYIRRYREN 120 HQNGGIAPPR PSPAASSFTD EEVQFLMSVV PEPLGGYDGA ASSSKEAPPP DNYRSRPGTK 180 IRGTANAHGH HCSRLRAPGA LVLRTARAPI TYFSCQQKGS FATKCQCTKG EHVGTGIYQG 240 WPWCATVLYM RTRGRPVRRS SSRAGLLSLR SEPLICDRDQ GLQQAGTHGR RRAPGYVRHR 300 SPLCPSLGSV TLVTVTLKVH VAFCVSVCVV AGNSNVVDAS LVDDGEDGHC SAHLSVGESS 360 PDLVLPLDAL ASTLLVPESK GQVDVPTCAW ETIDQCITEA AARLAFESAN AAARGNRKVI 420 TPEDVNRAIE SLHQKDPDLG MVLKDMNVIV TRCNRATAVR RRRERRLRKE RAAAEKKAKK 480 QEDLEASAAK EGLSGRRSRK

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MERKAKRRAN GSVRDGKRPA PAAGSDDGDG AGNELPMANV VRLMRQVIPT DVKISGRAKR  60
LTHDCAVEFV AFVGGEAAEC AAAEHRRTIA PEDFTRAFER LGFDDYVAPL STYIRRYREN  120
HQNGGIAPPR PSPAASSFTD EEVQFLMSVV PEPLGGYDGA ASSSKEAPPP DNYRSRPGTK  180
IRGTANAHGH HCSRLRAPGA LVLRTARAPI TYFSCQQKGS FATKCQCTKG EHVGTGIYQG  240
WPWCATVLYM RTRGRPVRRS SSRAGLLSLR SEPLICDRDQ GLQQAGTHGR RRAPGYVRHR  300
SPLCPSLGSV TLVTVTLKVH VAFCVSVCVV AGNSNVVDAS LVDDGEDGHC SAHLSVGESS  360
PDLVLPLDAL ASTLLVPESK GQVDVPTCAW ETIDQCITEA AARLAFESAN AAARGNRKVI  420
TPEDVNRAIE SLHQKDPDLG MVLKDMNVIV TRCNRATAVR RRRERRLRKE RAAAEKKAKK  480
QEDLEASAAK EGLSGRRSRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-22	35	119	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	1e-20	nuclear factor Y, subunit B6