PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g03830.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 254aa    MW: 26916.4 Da    PI: 9.5015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g03830.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20123173155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a++ a+ +l+g
  Zjn_sc00007.1.g03830.1.sm.mk 123 SQFRGVRRRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDVAAVELRG 173
                                   789*******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-23123182IPR016177DNA-binding domain
PROSITE profilePS5103225.198124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-31124182IPR001471AP2/ERF domain
PfamPF008472.4E-13124173IPR001471AP2/ERF domain
CDDcd000181.15E-29124181No hitNo description
SMARTSM003801.3E-34124187IPR001471AP2/ERF domain
PRINTSPR003676.7E-11125136IPR001471AP2/ERF domain
PRINTSPR003676.7E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAPRLGRGGF RLPNAEQEDS LFLRALISVV SGDTAVPTLD VLAEPKPQVA AAPALAPAAF  60
CARCGVHGCR LGCELSAVVD AAATAGSSGD SEDEEGESSS RRGVTGGVGK RGRSRRRARA  120
RVSQFRGVRR RPWGKWAAEI RDPRRAVRKW LGTFDTAEEA ARAYDVAAVE LRGQRAKLNF  180
PAAASVGAAT ARSAAASASA QQLPLPILRE SIREKCGSNA ASPEPMAPVP KDPEIWDGLN  240
EIIMSDDGSF WQMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-221201901081Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110120RGRSRRRARAR
2114130RRRARARVSQFRGVRRR
3115131RRARARVSQFRGVRRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730584e-79EU973058.1 Zea mays clone 392659 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.11e-90ethylene-responsive transcription factor ERF109
TrEMBLQ6Z7P93e-89Q6Z7P9_ORYSJ; AP2 domain-containing transcription factor-like
STRINGOS02T0764700-016e-90(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-18ERF family protein