PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g02920.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22478.1 Da PI: 4.7849 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.6e-16 | 8 | 58 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr +k +g+Wv+eIr p++ r r++lg+++ +e+Aa+a +aa l+g Zjn_sc00007.1.g02920.1.sm.mk 8 KKYKGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVFLRG 58 59******99.**********933...5********************9877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.43E-24 | 8 | 71 | No hit | No description |
Pfam | PF00847 | 8.4E-9 | 9 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-26 | 9 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.298 | 9 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-18 | 9 | 71 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-27 | 9 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDGGRESKKY KGVRLRKWGK WVSEIRLPNS RERIWLGSYD APEKAARAFD AAFVFLRGRD 60 AAGADLNFPD SPPPCRASCS IDPQEVQAAA LSHANRAAVS TGEAAATFMD VDDSPLELLS 120 REALTHGTGF LDAGSGIEVV APVRADGSID WRPVMAHPPP LFSPVGWGSN AYDFLQVPPA 180 AAAAAAADED MEESIHGAST SLWSFDMRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-12 | 4 | 69 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794487.1 | 4e-96 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 3e-34 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A3G2LN09 | 1e-122 | A0A3G2LN09_9POAL; ERF transcription factor | ||||
STRING | Pavir.J00593.1.p | 7e-95 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-36 | ERF family protein |
Publications ? help Back to Top | |||
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