PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g01670.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 225aa MW: 25086.7 Da PI: 10.5201

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g01670.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.5	8.9e-07	190	211	10	31
HHHHHHHHHHHHHHHCTSCCC. CS HLH 10 rrRRdriNsafeeLrellPkas 31 +rRR+riN+++ L++l+P++s Zjn_sc00007.1.g01670.1.am.mk 190 QRRRSRINEKMKALQTLIPNSS 211 8******************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.9E-5	190	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-6	190	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MRKTASSRSL GGDTDGPADE TRRREQLKGR FLKSSARRCS FLGPTESRNK QTNDLEREEE 60 HKASAMEKPR KCRCLASGSG DHFSLANPVN LASTCELSCR GATAMDGQHQ LDLIMRHQSM 120 ANICDSEDAL GSSESEPARP ARPRGKRSRA AEVHNLSEKV VAWFLPLFAL DIFLAERRCS 180 LILMLVKLVQ RRRSRINEKM KALQTLIPNS SKVHHKASPP SLVHS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037069	6e-56	BT037069.1 Zea mays full-length cDNA clone ZM_BFb0153L05 mRNA, complete cds.
GenBank	EU957773	6e-56	EU957773.1 Zea mays clone 1615677 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954276.1	2e-36	transcription factor SPATULA isoform X1
Refseq	XP_022682068.1	6e-37	transcription factor SPATULA isoform X2
TrEMBL	K3YU16	4e-35	K3YU16_SETIT; Uncharacterized protein
STRING	Si017762m	7e-36	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28021	3	4