PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g00510.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 640aa MW: 69671.8 Da PI: 4.1704 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.6 | 2.5e-49 | 17 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya........ 69 l+pGfrFhPtdeelv++yL+++++g++l++ ++i+evd+y++ePwdLp +++++++ +wyfF++ d+k + Zjn_sc00007.1.g00510.1.am.mkhc 17 LAPGFRFHPTDEELVSYYLRRRIAGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKITgagaggrg 94 579***************************.99***************5448999999***********9977777766 PP NAM 70 .tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+r+nrat +gyWk+tgkd+ev++ +g+ vg+kktLvf++grapkg +t+Wvmheyrl Zjn_sc00007.1.g00510.1.am.mkhc 95 gPGNRTNRATPQGYWKTTGKDREVFH-RGKPVGMKKTLVFHNGRAPKGARTNWVMHEYRL 153 5567**********************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-55 | 14 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.462 | 17 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-27 | 19 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MSNQSPLDSS PPAEVPLAPG FRFHPTDEEL VSYYLRRRIA GRRLRVDAIA EVDLYRLEPW 60 DLPSLSRIRS RDAQWYFFAR LDRKITGAGA GGRGGPGNRT NRATPQGYWK TTGKDREVFH 120 RGKPVGMKKT LVFHNGRAPK GARTNWVMHE YRLLDADGPQ DLHVVCRIFQ KFGSGPQNGA 180 QYGAPYMEEE WEEDDDAIEK GAIIGASTKV AATSDTADEE LNEEEENGDC KTSELAQADE 240 ILNLPVVAAP QAQGLNETSD GSCADGAIFL EEILSSTVNV ENITGPDGQN ATDDSFSVAD 300 FSGCLTKDDG YIGQDGTMNW SLPANGEGTD WPLRAYSNQN PVNETLSADE FFDTGNVTYD 360 NAYSGPQQIC QSDYQNLNLQ ADGFVAQNQV DDGMAFYDAP PIWVDGDNDI YLSDILNEPL 420 ENQSLFEGDG MDYFVDAPEN DFKYDMLGSG EGSDYQLPEM SNFAQKGDYN DESACDGISK 480 TSIANGQYGA SSSGSHDDLY PYDAVPVDGT AGKTFGKHLV NLLDSIPTKT ALAEENPPAT 540 RKSVLNAVSP SSIRVTAGII QLGGLNFTAS EHGPLQKNGD FSLLLSFAMD GDVASKSVSF 600 EPATRVGAVP MVMRSGLYLF FVSAMILMLS YKVGLCIYSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-44 | 13 | 153 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064133 | 0.0 | BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds. | |||
GenBank | BT067581 | 0.0 | BT067581.1 Zea mays full-length cDNA clone ZM_BFc0097N06 mRNA, complete cds. | |||
GenBank | EU975936 | 0.0 | EU975936.1 Zea mays clone 505923 NAC domain-containing protein 78 mRNA, complete cds. | |||
GenBank | KJ726985 | 0.0 | KJ726985.1 Zea mays clone pUT3686 NAC transcription factor (NAC26) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817703.1 | 0.0 | NAC domain-containing protein 53-like | ||||
TrEMBL | A0A3L6RSV2 | 0.0 | A0A3L6RSV2_PANMI; NAC domain-containing protein 53 | ||||
STRING | Pavir.Ab03009.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12931 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-61 | NAC domain containing protein 53 |