PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00006.1.g05790.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 850aa MW: 91594.1 Da PI: 6.191

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00006.1.g05790.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.6	6.4e-06	204	233	18	47
HHHHSSS--HHHHHHHHHHCTS-HHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvW 47 F+ + +p++e+r+ LA k+g++ +qVk W Zjn_sc00006.1.g05790.1.am.mk 204 SFKWCAHPDEEMRKALAVKIGMEPTQVKHW 233 699999***********************9 PP
2	START	78.9	1.2e-25	351	565	3	203
HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWde 74 ae+a +e++++a+a+ p+W + e +n e+ + + + + a r++gvv +++ +lv l d + +W++ Zjn_sc00006.1.g05790.1.am.mk 351 AERAVREFLALAAAGVPMWLPTAgngEVLNIGEYAARMFPRLLgpcpqgFVSVATRETGVVWAAPGDLVGVLTDAG-RWSQ 430 78999****************99955555555555544333699988999********************. PP T-S...EEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EES CS START 75 tla...kaetlevissggalqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaell 148 +++ +a t + s g l q+ sp vp + f+R+++ +++ +w++vdvS+d + + + R++l Zjn_sc00006.1.g05790.1.am.mk 431 MFPgivAAVTARDVGSSGMFGLPDGLIQL-SPRVPnHSVKFLRFTKMmENGRQWAVVDVSIDAILAVGQegGVEHTRCGLM 510 98766666677777888888888888.9999999*****99999******99998865667778* PP SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 pSg+lie++++g skvtw+ ++++++ +++ l+r+++ sg+a ga +w+atl+r Zjn_sc00006.1.g05790.1.am.mk 511 PSGCLIEEMDGGCSKVTWIVQAEYDETSVPPLFRPFLPSGQALGACRWLATLKRK 565 **************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	3.76E-4	202	233	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-5	203	233	IPR009057	Homeodomain-like
PROSITE profile	PS50848	24.897	340	571	IPR002913	START domain
CDD	cd08875	6.30E-72	345	564	No hit	No description
SuperFamily	SSF55961	3.8E-15	348	564	No hit	No description
SMART	SM00234	1.1E-5	349	568	IPR002913	START domain
Pfam	PF01852	2.6E-19	351	565	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MPNKFKQQGP RVGLVEHLHD VDWRPPERRR NPGSKRAVGG GGPSGREARE IGVGESPGIG 60 EARLEIRSHR AVGEADPDPA AGQERIYVGS WVVLADDRER ETCWRKKMIF SPLDCYQVIM 120 ENEGAQNNSN IQGVSLTIGT DHATEQVSME NEGAHHTSNV DDASLTTGTD DASEQIWDSE 180 EFDIDALLED EDASASTDND AQHSFKWCAH PDEEMRKALA VKIGMEPTQV KHWRVKELIE 240 LPISWTNHQY AQVKSLSQAN NQLHGHNAFL KAENVALRKR VLERSCFACV CLMAPPELLT 300 GKQRLIVENA RLKEAYQRAQ TRLKELSRGA PLPLAAPSIA QDHAALLLHH AERAVREFLA 360 LAAAGVPMWL PTAGNGEVLN IGEYAARMFP RLLGPCPQGF VSVATRETGV VWAAPGDLVG 420 VLTDAGRWSQ MFPGIVAAVT ARDVGSSGMF GLPDGLIQLS PRVPNHSVKF LRFTKMMENG 480 RQWAVVDVSI DAILAVGQEG GVEHTRCGLM PSGCLIEEMD GGCSKVTWIV QAEYDETSVP 540 PLFRPFLPSG QALGACRWLA TLKRKYEFMG ILKNSFPAAG DGNKVVMEMA RRMTASFYAA 600 ISGPATLPGS TVREWRGGSG TGGDERFQAS VRMVIWTCVG GVPARPASVQ VLSATTTVWL 660 PGTEPRLVLD YLCDERRRGE WDVLAAGGAV NVMGSIITGN LHGNAISILR PNGTDGTNEK 720 MRVLQEAYSD KSCSMVVYSP IEETTLLAIA NGGDPASGFL LPSGFAILPD GHRKASRAPA 780 AAASSSSGAP PPWHRTTTGC LLTAAYQTLL PAEPPTANLP AGAFDVVGKQ LCLAIDKVKA 840 AVEADVVVAA

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MPNKFKQQGP RVGLVEHLHD VDWRPPERRR NPGSKRAVGG GGPSGREARE IGVGESPGIG  60
EARLEIRSHR AVGEADPDPA AGQERIYVGS WVVLADDRER ETCWRKKMIF SPLDCYQVIM  120
ENEGAQNNSN IQGVSLTIGT DHATEQVSME NEGAHHTSNV DDASLTTGTD DASEQIWDSE  180
EFDIDALLED EDASASTDND AQHSFKWCAH PDEEMRKALA VKIGMEPTQV KHWRVKELIE  240
LPISWTNHQY AQVKSLSQAN NQLHGHNAFL KAENVALRKR VLERSCFACV CLMAPPELLT  300
GKQRLIVENA RLKEAYQRAQ TRLKELSRGA PLPLAAPSIA QDHAALLLHH AERAVREFLA  360
LAAAGVPMWL PTAGNGEVLN IGEYAARMFP RLLGPCPQGF VSVATRETGV VWAAPGDLVG  420
VLTDAGRWSQ MFPGIVAAVT ARDVGSSGMF GLPDGLIQLS PRVPNHSVKF LRFTKMMENG  480
RQWAVVDVSI DAILAVGQEG GVEHTRCGLM PSGCLIEEMD GGCSKVTWIV QAEYDETSVP  540
PLFRPFLPSG QALGACRWLA TLKRKYEFMG ILKNSFPAAG DGNKVVMEMA RRMTASFYAA  600
ISGPATLPGS TVREWRGGSG TGGDERFQAS VRMVIWTCVG GVPARPASVQ VLSATTTVWL  660
PGTEPRLVLD YLCDERRRGE WDVLAAGGAV NVMGSIITGN LHGNAISILR PNGTDGTNEK  720
MRVLQEAYSD KSCSMVVYSP IEETTLLAIA NGGDPASGFL LPSGFAILPD GHRKASRAPA  780
AAASSSSGAP PPWHRTTTGC LLTAAYQTLL PAEPPTANLP AGAFDVVGKQ LCLAIDKVKA  840
AVEADVVVAA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Si033066m	1e-180	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8324	17	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	2e-95	protodermal factor 2