PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00006.1.g03280.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 435aa MW: 44280.6 Da PI: 7.3263

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00006.1.g03280.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	2e-11	217	260	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ +++L + lP + +K +Ka+i+++A++YIk L+ Zjn_sc00006.1.g03280.1.sm.mk 217 TERDRRKKMRTLYSTLHSFLPRL----PEKADKATIVKEATDYIKTLE 260 6*******************6....39**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.344	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	212	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.73E-10	214	260	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-12	214	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-6	215	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-9	217	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MSQQGANLPQ DVEGSLPGGA GSEGTAGSGS GSAKQAVEII SSGWKPASPV INLPQEVQGT 60 HVGDASPGEA TPEAVVLAGT AGFNSSFSSV KLAAEDGGGG SKPASPLEVQ AGDKTAGSKP 120 PSPVVGLVAH AGEPARPAAV VGAGGSDKGK EKDEPAAEEG AGDIAGSSSK SIKSSSDGDV 180 QGDAKDAPAP AAGGDGSGKR KGKGVAAEAD HALHMWTERD RRKKMRTLYS TLHSFLPRLP 240 EKADKATIVK EATDYIKTLE GTVHMLEKLK LERLKVAQLL GAGSNSSRRA AAPPPPMRHG 300 GGAAPAPAPA PANMGTSSWN VPQATAAPPP PPPQVRPLQT WSLPNITVSV AGNEAFFALS 360 APRQQAAVSK ALFVLDKFCI DVLTLHVSSD QTRCSLTIHT RLNAAAGNVA LELMTAETRY 420 ELAASELARW INNAQ

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MSQQGANLPQ DVEGSLPGGA GSEGTAGSGS GSAKQAVEII SSGWKPASPV INLPQEVQGT  60
HVGDASPGEA TPEAVVLAGT AGFNSSFSSV KLAAEDGGGG SKPASPLEVQ AGDKTAGSKP  120
PSPVVGLVAH AGEPARPAAV VGAGGSDKGK EKDEPAAEEG AGDIAGSSSK SIKSSSDGDV  180
QGDAKDAPAP AAGGDGSGKR KGKGVAAEAD HALHMWTERD RRKKMRTLYS TLHSFLPRLP  240
EKADKATIVK EATDYIKTLE GTVHMLEKLK LERLKVAQLL GAGSNSSRRA AAPPPPMRHG  300
GGAAPAPAPA PANMGTSSWN VPQATAAPPP PPPQVRPLQT WSLPNITVSV AGNEAFFALS  360
APRQQAAVSK ALFVLDKFCI DVLTLHVSSD QTRCSLTIHT RLNAAAGNVA LELMTAETRY  420
ELAASELARW INNAQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-21	bHLH family protein