PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g02650.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 237aa    MW: 25334.9 Da    PI: 5.5473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g02650.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-182372255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa+a++ a+++l+g
  Zjn_sc00006.1.g02650.1.am.mk 23 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAAAHDVAALRLRG 72
                                  69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-232280No hitNo description
SuperFamilySSF541712.03E-212381IPR016177DNA-binding domain
SMARTSM003801.9E-352386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-312380IPR001471AP2/ERF domain
PROSITE profilePS5103223.5252380IPR001471AP2/ERF domain
PRINTSPR003677.2E-102435IPR001471AP2/ERF domain
PfamPF008471.2E-112472IPR001471AP2/ERF domain
PRINTSPR003677.2E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDHMAATDLL LPTITSGQGP QQQYRGVRKR KWGKWVSEIR QPGTKTRIWL GSFESAEMAA  60
AAHDVAALRL RGRDAQLNFP GSVGWLPRPA TTHPADPALV QARCTHQDLC EFGELRAVPA  120
GRTVELAGSD EEFDLDLGSP RLWAEMAEAM LLDPPRLDMG VSDMEVTQCC SPTPVHMLSS  180
EIHVAVVSPW ATPPCVIQVG LGFAASVANP AAPINPSCVG LTTSTHDPPA TPSCAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-162280160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-172280463ATERF1
3gcc_A9e-172280463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581359e-86EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds.
GenBankEU9581609e-86EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975709.11e-63ethylene-responsive transcription factor ERF027-like
TrEMBLA0A0A9BXV18e-72A0A0A9BXV1_ARUDO; Uncharacterized protein
STRINGOMERI04G11400.12e-54(Oryza meridionalis)
STRINGTRIUR3_32168-P11e-54(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-26ERF family protein