PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00006.1.g02630.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 148aa MW: 17123.9 Da PI: 10.0053

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00006.1.g02630.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.5	2e-24	10	56	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr g+lKKA ELS+LCda++ vi+fs++gk+y+ Zjn_sc00006.1.g02630.1.sm.mk 10 RIENPVHRQVTFCKRRMGLLKKARELSILCDADIGVIVFSPHGKIYD 56 8********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.833	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-34	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.33E-27	1	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.26E-36	2	73	No hit	No description
PRINTS	PR00404	6.6E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-24	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KARELSILCD ADIGVIVFSP HGKIYDLATN 60 GNIRGLIERY RSTYTKGESS EQDKPQFKMQ IMSRELDMLR NKEGILKAAN DILQQRIIEQ 120 NGILDISGNV MMPQVPYQPA MESNYYFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU976131	2e-61	EU976131.1 Zea mays clone 645550 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194477.1	4e-73	MADS-box transcription factor 26-like
Refseq	XP_020194478.1	4e-73	MADS-box transcription factor 26-like
Swissprot	A2YQK9	7e-46	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	7e-46	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	A0A0E0P9N0	1e-73	A0A0E0P9N0_ORYRU; Uncharacterized protein
STRING	ORUFI04G15060.1	2e-74	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1491	36	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	2e-39	AGAMOUS-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]