 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00006.1.g02570.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
NAC |
| Protein Properties |
Length: 470aa MW: 51760 Da PI: 7.4805 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00006.1.g02570.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 152.4 | 2.1e-47 | 111 | 275 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................................ 49
+ppGfrFhPtd+el+ +yLkkk+ +k++l evi+evd++k+ePw+L+
Zjn_sc00006.1.g02570.1.am.mk 111 VPPGFRFHPTDKELLLYYLKKKIGFEKFDL-EVIREVDLNKIEPWELQVrlvhartlfrslvvggdassswctdwrgrsme 190
69****************************.99**************95589************************99988 PP
NAM 50 .....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124
++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mh
Zjn_sc00006.1.g02570.1.am.mk 191 haercRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SYSKIGMRKTLVFYRGRAPHGQKTDWIMH 270
8776633333567*************************************9.8889************************* PP
NAM 125 eyrle 129
eyrle
Zjn_sc00006.1.g02570.1.am.mk 271 EYRLE 275
***85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MRTTSSVDGS SSKASMHLLW EQSSDPILQL TEFPALALMA VPCVLRDQAG FIPVRRRQLF 60
PVFTTVQLLG WPTQLVLASC CVDDAHAALT VERATRAGVL TMAAFSSSNG VPPGFRFHPT 120
DKELLLYYLK KKIGFEKFDL EVIREVDLNK IEPWELQVRL VHARTLFRSL VVGGDASSSW 180
CTDWRGRSME HAERCRIGSA PQNEWYFFSH KDRKYPTGSR TNRATTAGFW KATGRDKCIR 240
TSYSKIGMRK TLVFYRGRAP HGQKTDWIMH EYRLEEADDA QGGTGEDGWV VCRVFKKKCF 300
FKIGAGGEGS TRQGADAGDH LAVSPPLGSH THQGALASHY MHPHHQYYHA ASSSYYSQMQ 360
VPAAYTHQVQ VQDLLTNHRP TAYAGYDDFS GLPVDHPAAG SLDVGSSDGV AATDGGQLGE 420
GSRDEASGAA EQQWQAIDGF DSGAGSAAVE QMTVRAGQRG GEMDLWGYGR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-46 | 111 | 298 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-46 | 111 | 298 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-46 | 111 | 298 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-46 | 111 | 298 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-46 | 111 | 298 | 17 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 1e-46 | 111 | 298 | 17 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU971542 | 1e-138 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
