PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g09180.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 405aa    MW: 43720.9 Da    PI: 7.3033
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g09180.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.6e-114165226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                    ++  C +++rtGtC yG+rC+++H+
  Zjn_sc00005.1.g09180.1.sm.mkhc 41 GETDCAYYLRTGTCAYGERCRYNHP 65
                                    6789********************8 PP
2zf-CCCH34.72.9e-1196121227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++C+++ +tG+Ck+G++CkF+H++
  Zjn_sc00005.1.g09180.1.sm.mkhc  96 GEKECSYYIKTGHCKFGATCKFHHPE 121
                                     5789********************96 PP
3zf-CCCH37.93e-12248274127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +++++C ++++tGtCk+G++Ck++H++
  Zjn_sc00005.1.g09180.1.sm.mkhc 248 PGQPECEHYMKTGTCKFGPTCKYHHPQ 274
                                     5789*********************97 PP
4zf-CCCH32.91.1e-10296320327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                       +C ++a+ G+Ck+G++CkF H++
  Zjn_sc00005.1.g09180.1.sm.mkhc 296 SQPCAYYAQHGYCKFGPTCKFDHPM 320
                                     679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6623967IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-63966IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-64367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-54569IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.60195122IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-496121IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-896121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-597121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4100120IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056247275IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5251274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4253272IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915293321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6295323IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8295320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5297318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEPHSGDGDP GTGLEEALQN LGLGGEEEGT AAAARLPERP GETDCAYYLR TGTCAYGERC  60
RYNHPHDRRA AEVNGVGRIT GTTEYPERPG QPLCEGEKEC SYYIKTGHCK FGATCKFHHP  120
ELGARETANI YPPVQQSTVS SSHPYPHFAS FQMGRPPFVP GSFLPSSYPP MMLPSAVMPM  180
QGWNPYISPM SQVTPAGGQQ TVQAGHPYGL PLQGPTSSVS YGNHYAPFYP SAGPSSSNKQ  240
GHGLPERPGQ PECEHYMKTG TCKFGPTCKY HHPQYFGAPN SNYMLNLLGL PLRPGSQPCA  300
YYAQHGYCKF GPTCKFDHPM GSYNPSVSSL TDMPVAPYPH SFPVAPMARS PSDLRPQYAV  360
TKEFPANQPA LPGTTHGHTE SVSKVYAPHT LIHSPASTAA GMQAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967812.10.0zinc finger CCCH domain-containing protein 5
RefseqXP_025815660.10.0uncharacterized protein LOC112892755
SwissprotQ5NAV31e-172C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0A9QL050.0A0A0A9QL05_ARUDO; Uncharacterized protein
STRINGPavir.Ea00915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-79C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]