PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g07820.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 285aa MW: 29511.7 Da PI: 6.512

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g07820.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	222	245	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 + + K++ +++LekA+ Y+k Lq Zjn_sc00005.1.g07820.1.sm.mk 222 QSIAAKVDLVTTLEKAITYVKFLQ 245 567889999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAQASKRATA AASWKPQLRP VVYDDEHSSM SLELFGYHGV VVDGEHDADA GAAFPGGGMQ 60 LAFDVDNFKG GAGCGPANYY SWTVYGGGGS GARASSSSSS SVLSFEQAGS GGQHLDAYSA 120 AGGDEDSAMW MDAAAGMVDH PAATSNFGFV SPGGSAYHHD GREIQELGSV QPQAKAAQKR 180 ARPIFYANLV GSEVQAAGGK KQCGGRKSKA KAAAPAPNKD PQSIAAKVDL VTTLEKAITY 240 VKFLQLQVKV LAADEFWPAQ GGKVPELSQV KDALDAILSS QHSNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455315.1	3e-87	transcription factor bHLH69
TrEMBL	A0A1E5W954	2e-95	A0A1E5W954_9POAL; Transcription factor bHLH83
STRING	Sb03g008290.1	1e-86	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	2e-26	ROOT HAIR DEFECTIVE6