PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00005.1.g04120.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 253aa MW: 27042.2 Da PI: 10.3446 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 2.9e-32 | 175 | 233 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Zjn_sc00005.1.g04120.1.am.mk 175 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 233 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-33 | 160 | 233 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 167 | 234 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 170 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 175 | 234 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-25 | 176 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MFPSPGRAAM ALGLGAQQLS STAAAGTSST PTVTFAFQPA PPTSDHSHHH HHHGVLGYGS 60 SHVLDRPTTA TSSSSSHAAA PSSTVPSSNL HHLQAAAAAH VSLPTRSSPP HPWSSDERGK 120 GATLTPGGGG LQHGAAAAAL GVGAVRMKKA GGGKARRKMR EPRFCFKTMS DVDVLDDGYK 180 WRKYGQKVVK NTQHPRSYYR CTQDNCRVKK RVERLAEDPR MVITTYEGRH VHSPSHDDDD 240 AAARANAEMT FLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-26 | 166 | 232 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-26 | 166 | 232 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108755 | 1e-121 | AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132878.1 | 1e-99 | uncharacterized protein LOC100194371 | ||||
TrEMBL | B4FIG2 | 2e-98 | B4FIG2_MAIZE; Putative WRKY transcription factor 13 | ||||
STRING | GRMZM2G151444_P01 | 4e-99 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 4e-47 | WRKY DNA-binding protein 13 |