PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g02270.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 254aa    MW: 26683.3 Da    PI: 4.1153
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g02270.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-0913362448
                                  HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                                  W++Ia +++ gRt++++k++w+++l
  Zjn_sc00005.1.g02270.1.sm.mk 13 WSLIAGHLP-GRTDNEIKNYWNSHL 36
                                  *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.626140IPR017930Myb domain
SuperFamilySSF466897.91E-71239IPR009057Homeodomain-like
CDDcd001671.68E-61336No hitNo description
Gene3DG3DSA:1.10.10.603.2E-121336IPR009057Homeodomain-like
PfamPF002491.5E-61336IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MCLPAAAGLE LAWSLIAGHL PGRTDNEIKN YWNSHLSRRA ADFRDGVVVD VDLSKLPGGG  60
RTSRGAAATA KGAKEKKEWG KAKEKVAEVL PPHDATKDQA EAEDSSHSDP PTPSSQPCHT  120
QSEEHAQASA SGVTSDGLED GPLGLSEEMV SGCPGFVGPN LMTTGSDGAC MDHESGLSMN  180
RDSVPNSGPS GDVAQELGEI KALEDWDLAG LDISVDDDMW GSGSLVWDYD GMGVVLEGGQ  240
QGELMSDLFF LDNM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5218809e-43AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds.
GenBankBT0399019e-43BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds.
GenBankBT0633089e-43BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds.
GenBankBT0882009e-43BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds.
GenBankHQ8587219e-43HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds.
GenBankHQ8587689e-43HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819210.15e-63myb-related protein P-like
TrEMBLA0A0A9JQV17e-71A0A0A9JQV1_ARUDO; Uncharacterized protein
STRINGPavir.J14839.1.p7e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3289934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-13myb domain protein 12