PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g01180.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 494aa MW: 52315.3 Da PI: 6.9857

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g01180.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.1	4.8e-13	83	117	3	37
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevav 37 i ++ +r t+s+Rr+g KKAeELS+LC+++va+ Zjn_sc00005.1.g01180.1.am.mk 83 IASQKKRAATLSRRREGFKKKAEELSILCGVRVAI 117 8899*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.36E-14	72	117	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-10	73	129	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.923	73	117	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.48E-17	75	117	No hit	No description
PRINTS	PR00404	6.0E-5	75	95	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-11	83	117	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-5	95	110	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MVHGAPASPR CVSKTELVMN EMEARSLHAP VACAVPAAQV RVSCPPQLRF YIYAAAFHPG 60 DRRSSRRARA GTMPRRKIPM ELIASQKKRA ATLSRRREGF KKKAEELSIL CGVRVAISEE 120 GVLNAYRALP DAARAAHTFR AYADAELGKE AAKLARVRQG GPAALSCWDK ALEGLDAEEA 180 RRVLEDVDAA IAAAEDRRVA LGLPALLDDS GGLHAVRTFG GGNFVDVEES ALGAQGLGGG 240 DANGGRYEQA VWTNDVRAAA MQPSYGFHQY PAGGGGANMD GYQLQMAAGM NGYQRQMAAD 300 LNGYQLQMAA GMNGYSDNND TRIISWDGIQ PCSGGLPHLG YASQCYGGMS GYRTQHVSST 360 GGRQPNLYNA VVPAGYPSFD IGHLYIDTPV GNNAQSYAGN FVNAPPALSH TMGTGDNFSN 420 AAPAQSPAVY HGGELINGSS YTTQQPAAQQ QIQSATSSQQ SLSGIEQLHY FSDVEDAQLQ 480 VQLMSSSPSA AHGS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MVHGAPASPR CVSKTELVMN EMEARSLHAP VACAVPAAQV RVSCPPQLRF YIYAAAFHPG  60
DRRSSRRARA GTMPRRKIPM ELIASQKKRA ATLSRRREGF KKKAEELSIL CGVRVAISEE  120
GVLNAYRALP DAARAAHTFR AYADAELGKE AAKLARVRQG GPAALSCWDK ALEGLDAEEA  180
RRVLEDVDAA IAAAEDRRVA LGLPALLDDS GGLHAVRTFG GGNFVDVEES ALGAQGLGGG  240
DANGGRYEQA VWTNDVRAAA MQPSYGFHQY PAGGGGANMD GYQLQMAAGM NGYQRQMAAD  300
LNGYQLQMAA GMNGYSDNND TRIISWDGIQ PCSGGLPHLG YASQCYGGMS GYRTQHVSST  360
GGRQPNLYNA VVPAGYPSFD IGHLYIDTPV GNNAQSYAGN FVNAPPALSH TMGTGDNFSN  420
AAPAQSPAVY HGGELINGSS YTTQQPAAQQ QIQSATSSQQ SLSGIEQLHY FSDVEDAQLQ  480
VQLMSSSPSA AHGS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4572	29	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47760.1	1e-07	AGAMOUS-like 102