PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g12760.1.cf-es.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 305aa    MW: 31734.8 Da    PI: 9.9277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g12760.1.cf-es.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08105130227
                                        -S---SGGGGTS--TTTTT-SS-SSS CS
                            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                        kt+ C  +     Ck+G +C+FaHg+
  Zjn_sc00004.1.g12760.1.cf-es.mkhc 105 KTRMCTKYNTAEGCKFGTKCHFAHGE 130
                                        9***********************96 PP
2zf-CCCH40.54.5e-13272297127
                                        --S---SGGGGTS--TTTTT-SS-SSS CS
                            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                        ykt+lC +f++ GtC +GdrC+FaHg+
  Zjn_sc00004.1.g12760.1.cf-es.mkhc 272 YKTKLCENFLK-GTCTFGDRCHFAHGE 297
                                        9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5963765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-63962IPR000571Zinc finger, CCCH-type
PfamPF146080.494562No hitNo description
Gene3DG3DSA:4.10.1000.107.9E-13102135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.072103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-8103134IPR000571Zinc finger, CCCH-type
PfamPF146080.19109129No hitNo description
SuperFamilySSF547917.14E-14167242IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-14170240IPR004088K Homology domain, type 1
SMARTSM003222.8E-10171241IPR004087K Homology domain
PROSITE profilePS5008414.739172236IPR004088K Homology domain, type 1
PfamPF000136.8E-11174236IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.8E-15270301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-9270301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.967271298IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-9271297IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10272297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEAAAAARKR SRTETSNGVA AGGKRPKDKE SFQTGLSSKS KPCTKFFSTI GCPFGEGCHF  60
SHFVPGGYPA VAKMLNLGSP AVSAPTRVPV DLAAVANSHP ASTSKTRMCT KYNTAEGCKF  120
GTKCHFAHGE RELGKPAYMS REDPPMGGRF GGRPDPHLQA TMGPPAGNFG ATATAKISVD  180
ASLAGGIIGK GGANTKHISR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASDMVGELI  240
MTISASMPTK NPSGATALAG RGGGGSGGRS NYKTKLCENF LKGTCTFGDR CHFAHGESEQ  300
RGGPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-174zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-150C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLC5Y9Z91e-173C5Y9Z9_SORBI; Uncharacterized protein
STRINGSb06g032000.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-52C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]