PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g08940.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 646aa    MW: 68435.9 Da    PI: 8.2564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g08940.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.3e-31271329259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Zjn_sc00004.1.g08940.1.am.mk 271 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRQDPNMLVITYTSEHNHP 329
                                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.443265331IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30269331IPR003657WRKY domain
SuperFamilySSF1182906.28E-26269331IPR003657WRKY domain
SMARTSM007741.0E-37270330IPR003657WRKY domain
PfamPF031061.2E-25272329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MAFYRARQAR AAAMPPCLAS TTEPPVDRQR CPSQRDIAMC DSYFLQRMEG DQAGGGDLTD  60
VVRAGGVVPG NAEVPSTAAE WQLQGEPMFY PPPPSSSDGC AGCTGASVFG DLFSGLGDPF  120
SSDFSSGADF LDAMPDAMAK VGFDTAVGGG GSGCGGGGAQ MLDMSRKAPL LPRGVQMPPT  180
VGLLGPRVLP SPLSPRAIRP YPPMGGDMVK LGITAGQIAG CAIDAAVVGM QMSSPRAAGG  240
IKRRKNQARK VVCIPAPTAA SGRPTGEVAP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK  300
GCSARKQVER SRQDPNMLVI TYTSEHNHPW PTQRNALAGS TRNHHGKNGS GSSGSKSSQN  360
EKQKLPNVKE ESKDQATTAS TINTATSTSP VPAVKEEALP GSEALGRTMD ATGAADHNNL  420
TLMDHVFISE SYKPMIPEAG QPDDFFFDLA ELESDPMSLI FSKDRIEENP AGGDDDRGKD  480
KAIIKDLDPF EMLDWTDEHV HVPSGTTDTP ARSLASTAAP SRAVGDVRSH RSCAAHARAG  540
LCRQITRPHA TRYVLDPVRE RTAATTTATT TGGRGEDWVV KRPIIRHSSA GAHPVRPPEH  600
QAHSGATVVG RSANCSEQPG VRAPALLLFR APAPGRLIDR RGDRIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-24245332280Disease resistance protein RRS1
5w3x_D7e-24245332280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731001e-93AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825027.10.0probable WRKY transcription factor 35
TrEMBLA0A1E5VDC20.0A0A1E5VDC2_9POAL; Putative WRKY transcription factor 35
STRINGSi011735m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-63WRKY DNA-binding protein 35