PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g06540.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 375aa MW: 40017.2 Da PI: 8.4302 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 107 | 157 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Zjn_sc00004.1.g06540.1.am.mk 107 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 157 57*****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-13 | 107 | 157 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.93E-30 | 107 | 166 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-21 | 108 | 166 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.3E-38 | 108 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 108 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.118 | 108 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MESDASHAPT TSSSSSSSTS SSSSLILNGG PEDLSKNCKP TTKRKRVASP DCQEVEANND 60 TTGTGTNGHG EESSSCCSTD DNAGSGNNNK AQAASAAATR RSGFKHPSYR GVRRRSWGKW 120 VSEIREPRKK SRIWLGTFPT AEMAARAHDV AALAIKGRAA HLNFPHRAHE LPRPASTSPA 180 DIQAAAAQAA QCDASLSSGE VQPLSPEEAA CPESETVRAD SDGGQEHALF DLPDLLLDLR 240 DGLWWSPVWP GPESMAAEEY DVVGMQEPLL TERSKLKERR YPPRAFVLFR LRSSDDAQSR 300 SGLRISGEHA ATRGDGQHMG ARGARRHRTA APLRSACNLY VNHAGRPGGC SPRIPCCGSL 360 VAARSSLARS EARAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 100 | 166 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM576131 | 1e-103 | KM576131.1 Oryza rufipogon dehydration responsive element binding protein 4-2 (DREB4-2) gene, promoter region and complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824727.1 | 2e-78 | ethylene-responsive transcription factor ERF024-like | ||||
TrEMBL | A0A1E5VNF5 | 1e-101 | A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038 | ||||
STRING | Pavir.Ga01095.1.p | 1e-78 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 7e-38 | ERF family protein |