 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00004.1.g06010.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 252aa MW: 28103.1 Da PI: 5.2287 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00004.1.g06010.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.6 | 1.2e-19 | 53 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ft+eq++ Le++F + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++
Zjn_sc00004.1.g06010.1.sm.mk 53 KRRFTEEQIRSLESMFDAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
458**************9899********************************9 PP
|
| 2 | HD-ZIP_I/II | 125.3 | 2.8e-40 | 51 | 144 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80
e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aLk++ydal++ e+L
Zjn_sc00004.1.g06010.1.sm.mk 51 ERKRRFTEEQIRSLESMFDAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALKSKYDALHACVESL 131
69*****************9999********************************************************** PP
HD-ZIP_I/II 81 ekeveeLreelke 93
++e+ +L+++l+e
Zjn_sc00004.1.g06010.1.sm.mk 132 KQEKLALTAQLHE 144
*********9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MDRSDHHQHQ FFVQPQPQQL CVQTMMDAEQ SFLVGRGGGA GGGVAAGMRG ERKRRFTEEQ 60
IRSLESMFDA HHAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDYAALKSK 120
YDALHACVES LKQEKLALTA QLHELNERLR EREDRARSSA GAAATASSSS CNGGGEEEVE 180
DDKRNVLAGC VDMEPPESCV LGGPCATPAD VSVGSEYDDH HADYDHGFPE SFCAATPELW 240
EPWPFVEWNA AA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728250 | 1e-138 | KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds. |
