PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g02880.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 295aa    MW: 32431.5 Da    PI: 11.9037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g02880.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29216266151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  Zjn_sc00004.1.g02880.1.am.mk 216 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 266
                                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.039208268IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-29208273IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-39208267IPR002100Transcription factor, MADS-box
CDDcd002651.10E-39209272No hitNo description
PRINTSPR004042.7E-31210230IPR002100Transcription factor, MADS-box
PROSITE patternPS003500210264IPR002100Transcription factor, MADS-box
PfamPF003194.5E-25217264IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-31230245IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-31245266IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MRDIDAYSVE LRFCPRRAVT IAFSDGQFQD QLACCSRTWM RCSDPQPCAS APVLLALADG  60
TNVAGRQGGM VRGRSLSPAR AAARVRSSAG LMTRARRGAP PCPPRRDGGR HVPPSAGPGP  120
RRESAAAALP GECQNVRLAK GLSARARQGV RPGFFHVHPR RHPRCVAGFV DTRREVGPAG  180
TWEEKARKSG REGNRPGANL QLRLRRSMGR GKVELKRIEN KISRQVTFAK RRNGLLKKAY  240
ELSVLCDAEV ALIIFSTRGR LFEFSTSSWH SMTMASLMVP TCPRPAPAWD FLLLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18208267160Myocyte-specific enhancer factor 2B
1tqe_Q1e-18208267160Myocyte-specific enhancer factor 2B
1tqe_R1e-18208267160Myocyte-specific enhancer factor 2B
1tqe_S1e-18208267160Myocyte-specific enhancer factor 2B
6c9l_A1e-18208267160Myocyte-specific enhancer factor 2B
6c9l_B1e-18208267160Myocyte-specific enhancer factor 2B
6c9l_C1e-18208267160Myocyte-specific enhancer factor 2B
6c9l_D1e-18208267160Myocyte-specific enhancer factor 2B
6c9l_E1e-18208267160Myocyte-specific enhancer factor 2B
6c9l_F1e-18208267160Myocyte-specific enhancer factor 2B
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123597e-87DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds.
GenBankDQ5123627e-87DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds.
GenBankDQ5344917e-87DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4244033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.38e-32MIKC_MADS family protein