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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00004.1.g02880.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
M-type_MADS |
| Protein Properties |
Length: 295aa MW: 32431.5 Da PI: 11.9037 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00004.1.g02880.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 92.8 | 1.6e-29 | 216 | 266 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
Zjn_sc00004.1.g02880.1.am.mk 216 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 266
79***********************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MRDIDAYSVE LRFCPRRAVT IAFSDGQFQD QLACCSRTWM RCSDPQPCAS APVLLALADG 60
TNVAGRQGGM VRGRSLSPAR AAARVRSSAG LMTRARRGAP PCPPRRDGGR HVPPSAGPGP 120
RRESAAAALP GECQNVRLAK GLSARARQGV RPGFFHVHPR RHPRCVAGFV DTRREVGPAG 180
TWEEKARKSG REGNRPGANL QLRLRRSMGR GKVELKRIEN KISRQVTFAK RRNGLLKKAY 240
ELSVLCDAEV ALIIFSTRGR LFEFSTSSWH SMTMASLMVP TCPRPAPAWD FLLLH
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-18 | 208 | 267 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ512359 | 7e-87 | DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds. |
| GenBank | DQ512362 | 7e-87 | DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds. |
| GenBank | DQ534491 | 7e-87 | DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds. |
