PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g01770.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1411aa MW: 149222 Da PI: 10.6659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g01770.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.5e-06	1019	1080	12	55
HHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a + +Ka++L + ++Y+k Lq Zjn_sc00004.1.g01770.1.am.mk 1019 RRERIAERMKSLQELVPNANkvgnplpchalsssfvriVVAALPTDKASMLDEIIDYVKFLQ 1080 9***************888*************777789***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.471	1007	1079	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.45E-4	1019	1084	No hit	No description
SuperFamily	SSF47459	1.7E-7	1019	1090	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-9	1020	1088	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1411 aa Download sequence Send to blast
MHGARACDTV LRRNARRQCA VDVEFIGLIV HGPYALPLPA GLPCKAALQR TPTSQRENSF 60 PCSALLPWRQ EQPEFTVPPE QKVKMAAPHC TSTCRFFPSL PSLLDRTNMG CSPPQLIPAP 120 HLALLAAPSG WGGVAVAIAT PSPPSPPPIS TSGVAGARGV PENSNSQSCV RGRADGGGAE 180 AGALPLPPPP RMAAVSSSSA AAAATIRAHL ARTGSGADCQ ASPRSLLSRI LLRGGDGGSS 240 GGVFGCRVRL PRRYGSGGSK DGGASEQGDT PRVKVVERAP PDMPIETPRS SLGAGRRKPE 300 EELVSMNLGL GASLVLLLSK SAVELNKMVE LRAQMEALVA EIRHAAQRKM EEKQAAPAMA 360 RASNSHQESN GSSATTTVVK DPIVFPAADA DVASNCSRTT DTALSARGGG GGGVVVDPME 420 AELQAELNRM QRGLELRLPK VKTKGNAVRD SPSRSCVDDG DEPEDDAGED DAESDEERCE 480 DKSPPHGGVS ARALERRLHE LLQKRQQERI VELEAALDAA QRRVHEKELE AARWRDAAKL 540 VSHRRDESRR TVVVASSSSS GRDGANARAH RHKKFRRVRL CGGSRNGRGS NGGGVTKYRC 600 FNTTRQAPGP FHPAVPPAGP LHEYGTHGKP IKRSRPTAHE GHARPARLDG RCPPKCFSAT 660 TRSTPRRSYA PPGARRRRDR ITTFKFPLTC HRNVSQLMRT ADFFAPASQP ASPPLVHSSF 720 LSVMGDREFG TVSSCAFPSP FFSIMSGDQS LIDARTRRIP PRHQPVSSPA QQPQSSIAMQ 780 PSGRELAGGD GAGGAQADDF FDQMLSTLPS AWADLDGTGG KSPWELSAGA EEGHSAQAPF 840 GDESALLASR LQQHQIGGDK SSSPVMLQLS DLHRNNGLAG GAGEDGGFSP LALFTDRSAP 900 AREEMESGFK SPNASGGDHA VFNGFGMHGA AAAVQQQFGQ QGGSVSPQSL GGPAASSGGA 960 PTGATSSAGG GAAPPRQQRV RARRGQATDP HSIAERVYHI AALLLVERLV KFSFKISLRR 1020 ERIAERMKSL QELVPNANKV GNPLPCHALS SSFVRIVVAA LPTDKASMLD EIIDYVKFLQ 1080 LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSISNKGN SPATNGGTGT GENGGGLRVT 1140 EHRVAKMMEE DMGTAMQYLQ GKGLCLMPIS LASAISSATS SASLLSRPPT RHQPPHDGSG 1200 AAAAATSSPA SAPNGAGGGD DARPVTDGAA KPQQSGHLPQ TRRFNGCFHP TRFVPTLPHN 1260 CNAEAALRGA FKERGWDSPP FRIRCPAPLP RHRLRRQLPP SRRLHIGLRP PPRPCPASTP 1320 ASTFAIRSRL APPLTSAVCS GPRTSHHLHA GLRRRVTRPC TAFGLRLLAL PRLLRGCLSQ 1380 PLHCSRIRHP SRRRLAWPLC RCSVTTSQAA R

Sequence ? help Back to Top

Protein Sequence Length: 1411 aa Download sequence Send to blast

MHGARACDTV LRRNARRQCA VDVEFIGLIV HGPYALPLPA GLPCKAALQR TPTSQRENSF  60
PCSALLPWRQ EQPEFTVPPE QKVKMAAPHC TSTCRFFPSL PSLLDRTNMG CSPPQLIPAP  120
HLALLAAPSG WGGVAVAIAT PSPPSPPPIS TSGVAGARGV PENSNSQSCV RGRADGGGAE  180
AGALPLPPPP RMAAVSSSSA AAAATIRAHL ARTGSGADCQ ASPRSLLSRI LLRGGDGGSS  240
GGVFGCRVRL PRRYGSGGSK DGGASEQGDT PRVKVVERAP PDMPIETPRS SLGAGRRKPE  300
EELVSMNLGL GASLVLLLSK SAVELNKMVE LRAQMEALVA EIRHAAQRKM EEKQAAPAMA  360
RASNSHQESN GSSATTTVVK DPIVFPAADA DVASNCSRTT DTALSARGGG GGGVVVDPME  420
AELQAELNRM QRGLELRLPK VKTKGNAVRD SPSRSCVDDG DEPEDDAGED DAESDEERCE  480
DKSPPHGGVS ARALERRLHE LLQKRQQERI VELEAALDAA QRRVHEKELE AARWRDAAKL  540
VSHRRDESRR TVVVASSSSS GRDGANARAH RHKKFRRVRL CGGSRNGRGS NGGGVTKYRC  600
FNTTRQAPGP FHPAVPPAGP LHEYGTHGKP IKRSRPTAHE GHARPARLDG RCPPKCFSAT  660
TRSTPRRSYA PPGARRRRDR ITTFKFPLTC HRNVSQLMRT ADFFAPASQP ASPPLVHSSF  720
LSVMGDREFG TVSSCAFPSP FFSIMSGDQS LIDARTRRIP PRHQPVSSPA QQPQSSIAMQ  780
PSGRELAGGD GAGGAQADDF FDQMLSTLPS AWADLDGTGG KSPWELSAGA EEGHSAQAPF  840
GDESALLASR LQQHQIGGDK SSSPVMLQLS DLHRNNGLAG GAGEDGGFSP LALFTDRSAP  900
AREEMESGFK SPNASGGDHA VFNGFGMHGA AAAVQQQFGQ QGGSVSPQSL GGPAASSGGA  960
PTGATSSAGG GAAPPRQQRV RARRGQATDP HSIAERVYHI AALLLVERLV KFSFKISLRR  1020
ERIAERMKSL QELVPNANKV GNPLPCHALS SSFVRIVVAA LPTDKASMLD EIIDYVKFLQ  1080
LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSISNKGN SPATNGGTGT GENGGGLRVT  1140
EHRVAKMMEE DMGTAMQYLQ GKGLCLMPIS LASAISSATS SASLLSRPPT RHQPPHDGSG  1200
AAAAATSSPA SAPNGAGGGD DARPVTDGAA KPQQSGHLPQ TRRFNGCFHP TRFVPTLPHN  1260
CNAEAALRGA FKERGWDSPP FRIRCPAPLP RHRLRRQLPP SRRLHIGLRP PPRPCPASTP  1320
ASTFAIRSRL APPLTSAVCS GPRTSHHLHA GLRRRVTRPC TAFGLRLLAL PRLLRGCLSQ  1380
PLHCSRIRHP SRRRLAWPLC RCSVTTSQAA R

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971433	5e-76	EU971433.1 Zea mays clone 364652 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4882	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	2e-40	LJRHL1-like 2