 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00004.1.g00650.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 354aa MW: 39719.5 Da PI: 7.1943 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00004.1.g00650.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 43.4 | 5.8e-14 | 51 | 89 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
F+ +++p++++r+ ++++lgL+ rq+k+WFqNrR+ +k
Zjn_sc00004.1.g00650.1.sm.mk 51 IFKDCPHPDENQRAVMSRELGLEPRQIKFWFQNRRTHMK 89
599********************************9988 PP
|
| 2 | START | 64.7 | 2.8e-21 | 227 | 335 | 78 | 164 |
EEEEEEEECTT........................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-T CS
START 78 kaetlevissg........................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdse 133
ka t++v+ +g ++++ + el ++plvp R+f f+Ry++q ++g w++vdvS d +
Zjn_sc00004.1.g00650.1.sm.mk 227 KAHTVDVLVNGiggrnesliminnncvmmttqvtnDFVTQVYEELHTMTPLVPtREFSFLRYCKQIEQGLWAVVDVSMDGQ 307
555555555555555555555555555555555556777777788888*******************************99 PP
TS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
START 134 qkppesssvvRaellpSgiliepksnghskv 164
+ + R+++lpSg+li ++sng+skv
Zjn_sc00004.1.g00650.1.sm.mk 308 HYGV---PPSRSRRLPSGCLIADMSNGYSKV 335
9987...467999*****************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008289 | Molecular Function | lipid binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0051537 | Molecular Function | 2 iron, 2 sulfur cluster binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MDFGDEPEGS SSQRRRKGYH RHTPRQIQQL EAPCGTVLIA SPAIAVIDVM IFKDCPHPDE 60
NQRAVMSREL GLEPRQIKFW FQNRRTHMKA QHERADNCFL RTENDKIRCE NISMREALRN 120
VICPNCGGPP VAEDYFDEHK LRTENASLKE ELERISSFTS KHLGRSFMPM PPMPTMPASG 180
LDLSVGTMSA PALDLDLLGS GSTGSRMGPF SCVTNKWMEV FPGIVSKAHT VDVLVNGIGG 240
RNESLIMINN NCVMMTTQVT NDFVTQVYEE LHTMTPLVPT REFSFLRYCK QIEQGLWAVV 300
DVSMDGQHYG VPPSRSRRLP SGCLIADMSN GYSKVSCAKA DCSTCTCFVL FARW
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT066813 | 9e-93 | BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds. |
