![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00003.1.g15140.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 35549 Da PI: 6.1731 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.1 | 1.3e-47 | 10 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.............vikevdiykvePwdLpkkvkaeek.ewyfFskrdkk 67 lppGfrFhP+deelv++yL++kv++++ + + + evd++ +ePwdLp+++k +++ ewyfFs+rd+k Zjn_sc00003.1.g15140.1.am.mk 10 LPPGFRFHPSDEELVCYYLRPKVAATSSSSLDqliavsispatsmLLVEVDLHVCEPWDLPEAAKLGDRqEWYFFSRRDQK 90 79**********************99944444466666777777569**************655555444*********** PP NAM 68 yatgkrknratksgyWkatgkdkevlsk....kgel....vglkktLvfykgrapkgektdWvmheyrl 128 yatg r+nrat +gyWk tgkdk v+++ + vg++ktLvfy grap+g+k+dWvmhe+rl Zjn_sc00003.1.g15140.1.am.mk 91 YATGPRTNRATPHGYWKVTGKDKVVHDRdehgN--GtmmvVGTRKTLVFYLGRAPNGRKSDWVMHEFRL 157 **************************9865541..15566***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-54 | 8 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.435 | 10 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-27 | 11 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MRLRDIESSL PPGFRFHPSD EELVCYYLRP KVAATSSSSL DQLIAVSISP ATSMLLVEVD 60 LHVCEPWDLP EAAKLGDRQE WYFFSRRDQK YATGPRTNRA TPHGYWKVTG KDKVVHDRDE 120 HGNGTMMVVG TRKTLVFYLG RAPNGRKSDW VMHEFRLGAA SCSSTSAASA MTPPQMEQDW 180 VLCRVFHKGK GEADNGGSSN VDMIASSSTG SSRLPALCSP PQPAHNLDGG RLFPTSVGSY 240 SSSPTIIIIS SGQQLVMDSD DHGVVTGQYL DAPTPAPAMI QQHAAAGDAV VAGSSAQLMD 300 MQGYGENVMR EMETMMSLQP GANNYFP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-42 | 2 | 188 | 5 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | O65508 | 1e-54 | NAC76_ARATH; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0D9VNG4 | 6e-68 | A0A0D9VNG4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G00700.1 | 1e-68 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25527 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-63 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
---|---|---|---|
|