PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g15120.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 660aa    MW: 72977.6 Da    PI: 6.5824
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g15120.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182886357
                                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                    k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Zjn_sc00003.1.g15120.1.am.mkhc 28 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 86
                                    5678****************************************************996 PP
2START78.51.6e-251662912125
                                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS
                           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 
                                     +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e
  Zjn_sc00003.1.g15120.1.am.mkhc 166 IAEETYTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLE 243
                                     789999****************************************************7777777777.********** PP

                                     EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEE CS
                           START  81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvi 125
                                     +      g  g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v 
  Zjn_sc00003.1.g15120.1.am.mkhc 244 VFTMFPAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVA 291
                                     *999999999*********************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2892387IPR001356Homeobox domain
SMARTSM003895.3E-152591IPR001356Homeobox domain
SuperFamilySSF466896.84E-162789IPR009057Homeodomain-like
CDDcd000861.39E-152888No hitNo description
PfamPF000464.6E-162986IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-173086IPR009057Homeodomain-like
CDDcd146863.52E-680119No hitNo description
PROSITE profilePS5084812.597156290IPR002913START domain
SuperFamilySSF559611.04E-19164292No hitNo description
SMARTSM002340.0034165366IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-9166293IPR023393START-like domain
PfamPF018523.3E-22166290IPR002913START domain
PfamPF086706.1E-31563659IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAAAVAMRGG SSDSGGGFDK GPGMDSGKYV RYTPEQVEVL ERLYIDCPKP SSSRRQQLLR  60
ECPILANIEP KQIKVWFQNR RCRDKQRKES SRLQAVNRKL TAMNKLLMEE NERLQKQVSQ  120
LVHENAHMRQ QLQNTSLTND TSCESNVTTP PNPIRDASNP SGLLSIAEET YTEFLSKATG  180
TAIDWVQMPG MKPGPDSVGI VAISHGCRGV AARACGLVNL EPTKVIEILK DRPSWFRDCR  240
SLEVFTMFPA GNGGTIELVY MQMYAPTTLV PARDFWTLRY TTTMEDGSLV AWSVPEVLRP  300
LYESSSVVAQ KMTTVALRHL RQIAQETSGE VVYALGRQPA VLRTFSQRLS RGFNDAISGF  360
NDDGWSIMGG DGIEDVVVAC NSTKKIRNNN NVGITFGAPG GIICAKASML LQSVPPAILV  420
RFLREHRSEW ADYNIDAYLA SALKASACSL PGLRPMRFSG GQMILPLAHT VENEEILEVV  480
RLEGQALTHD EALLSRDIHL LQLCTGIDEK SVGSSFQLVF APIDEHFPDD APLISSGFRV  540
IPLDMKTRVL SGFPEAATLA RWEKPMFTFA NKAGLDMLET SLIALQDLTL DKIFDESGRK  600
ALFSDISKLM EQGYVYLPSG VCMSGMGRHV SFDQAVAWKV LGEDSNVHCL AFCFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986037.10.0homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A3L6DGP70.0A0A3L6DGP7_MAIZE; Homeobox-leucine zipper protein HOX10
STRINGSi034251m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein