PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g13630.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 582aa MW: 62586.4 Da PI: 8.0064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g13630.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.7	1.6e-06	416	457	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r RR+ri ++ +eL +l+P +ls ae+L +A +++k Lq Zjn_sc00003.1.g13630.1.am.mk 416 ARERRRRISQKTAELSRLIPGgH------RLSTAEMLHEAAHHVKLLQ 457 5889999***********955......9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.426	407	456	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-9	411	466	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-6	413	463	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	413	462	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.29E-7	415	460	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MATTTTLATT ATLGDHALRA ATAPTLLRQV LIFLAPALWG FVATRWTGIL PARGGILPSL 60 TALSRQTALQ WPRQVRGVHM TAKQRVQTEI SKEKKQCSST LDEITDRTPV IWSPASGRAW 120 VFFLPCRGSD ELMRRSRLVL AAECRMRDCV SRCISGHATQ QTTRTGRGPA ARRAGSGGGD 180 TSVAVTRNAE EVGPLKATIE ETLNRTRAVD WPRIRRPSLG GVESSAASPP PPPPPSQNSL 240 SSSAQQPPMA LSFHPTTAPV FGHGLPAPDA ADVTSFLHDV HPEVSDALLG FVYDPLDAAS 300 TDAVLEDLLS IPNDADAFTT GPVVDDCDVS GFLGPIEDQF LTEVIEVEQH CDKKLRTACN 360 CNQQAPAALP EFLTEFDLSP PPPLKQPPTP LTFVQGADDA KKPGGNGGQS VQSTAARERR 420 RRISQKTAEL SRLIPGGHRL STAEMLHEAA HHVKLLQAQV GMLALMRSVG SSENEKLPIA 480 AAQEQMHALL VSGSVQERLT AERKCLVPRK LVDAMARDKA VKSNPLVNRD LTRFLASLEQ 540 QPPLACIRAR TAASLFAENA VRRAAGAVVC WFLTPDPDDV CP

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MATTTTLATT ATLGDHALRA ATAPTLLRQV LIFLAPALWG FVATRWTGIL PARGGILPSL  60
TALSRQTALQ WPRQVRGVHM TAKQRVQTEI SKEKKQCSST LDEITDRTPV IWSPASGRAW  120
VFFLPCRGSD ELMRRSRLVL AAECRMRDCV SRCISGHATQ QTTRTGRGPA ARRAGSGGGD  180
TSVAVTRNAE EVGPLKATIE ETLNRTRAVD WPRIRRPSLG GVESSAASPP PPPPPSQNSL  240
SSSAQQPPMA LSFHPTTAPV FGHGLPAPDA ADVTSFLHDV HPEVSDALLG FVYDPLDAAS  300
TDAVLEDLLS IPNDADAFTT GPVVDDCDVS GFLGPIEDQF LTEVIEVEQH CDKKLRTACN  360
CNQQAPAALP EFLTEFDLSP PPPLKQPPTP LTFVQGADDA KKPGGNGGQS VQSTAARERR  420
RRISQKTAEL SRLIPGGHRL STAEMLHEAA HHVKLLQAQV GMLALMRSVG SSENEKLPIA  480
AAQEQMHALL VSGSVQERLT AERKCLVPRK LVDAMARDKA VKSNPLVNRD LTRFLASLEQ  540
QPPLACIRAR TAASLFAENA VRRAAGAVVC WFLTPDPDDV CP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661333.1	4e-91	uncharacterized protein LOC101765829
TrEMBL	A0A3L6S6L1	7e-92	A0A3L6S6L1_PANMI; Uncharacterized protein
STRING	Pavir.Ia04589.1.p	2e-96	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	2e-22	bHLH family protein