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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zjn_sc00003.1.g12340.1.sm.mkhc |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
LBD |
| Protein Properties |
Length: 229aa MW: 24323 Da PI: 6.064 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00003.1.g12340.1.sm.mkhc | genome | ZGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 125.5 | 2.6e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78
+C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn +kll++lp +r++a+ ++ yeA+ar+rdP+yG+v+
Zjn_sc00003.1.g12340.1.sm.mkhc 7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNASKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVA 85
7*************************89*************************************************** PP
DUF260 79 vilklqqqleqlkaelallkee 100
+i++lqqq+++l+a+la+lk++
Zjn_sc00003.1.g12340.1.sm.mkhc 86 HIFALQQQVMTLQAQLASLKAQ 107
*****************99987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KLLAHLPLAD 60
RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQAAQ GQGVHEDAKG 120
FMGSAAEQLG YCYSWYSNSN GGGASAAAPA AQPCAYSNGG LTALLESDYM QQSLYHAGSD 180
DDGQQAMAYE AAVESSSFGA EESGWRSSSG YQDCEDLQSV AYAYLNHRS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF051732 | 1e-158 | EF051732.1 Zea mays rootless concerning crown and seminal lateral roots (rtcs) mRNA, complete cds. |
| Publications
? help Back to Top |
- Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
Genetic control of root development in rice, the model cereal.
Trends Plant Sci., 2010. 15(4): p. 219-26
[PMID:20153971] - Kitomi Y, et al.
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
Plant J., 2011. 67(3): p. 472-84
[PMID:21481033] - Coudert Y, et al.
Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
BMC Genomics, 2011. 12: p. 387
[PMID:21806801]
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