PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g12210.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 162aa    MW: 17189 Da    PI: 5.018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g12210.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19959255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr ++ +g+++AeIrdp  +    r++lg+f+tae Aa+a+++a+ +++g
  Zjn_sc00003.1.g12210.1.sm.mk  9 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAELAAQAYDRAAFAMKG 59
                                  8********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-34973IPR001471AP2/ERF domain
PfamPF008472.0E-13959IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22968IPR016177DNA-binding domain
CDDcd000185.01E-23969No hitNo description
Gene3DG3DSA:3.30.730.105.2E-31968IPR001471AP2/ERF domain
PROSITE profilePS5103223.973967IPR001471AP2/ERF domain
PRINTSPR003675.6E-111021IPR001471AP2/ERF domain
PRINTSPR003675.6E-113349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEDDKKGGKY RGVRKRPWGK FAAEIRDPER GGSRVWLGTF DTAELAAQAY DRAAFAMKGA  60
AAVLNFPAQT GRMSSGSSST STSAPAAGRR GISQVPDCSF SLSTSVPAAS STGMSQFPDC  120
SSSSSKSAPA ADGRGTSQVP DSEKVELEYL DDRILEEMLE EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28676269ATERF1
3gcc_A1e-28676269ATERF1
5wx9_A3e-288761380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275123e-69KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797533.11e-47ethylene-responsive transcription factor ERF096-like
TrEMBLA0A2S3IUL63e-46A0A2S3IUL6_9POAL; Uncharacterized protein
TrEMBLA0A3L6SED73e-46A0A3L6SED7_PANMI; Uncharacterized protein
STRINGSb01g046920.14e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-24ERF family protein