PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g11080.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 551aa    MW: 61047.9 Da    PI: 7.8135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g11080.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-17203256356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Zjn_sc00003.1.g11080.1.am.mk 203 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 256
                                   4568999**********************************************9 PP
2HD-ZIP_I/II126.31.3e-40202293192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da++++n++L 
  Zjn_sc00003.1.g11080.1.am.mk 202 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVQADNDALL 282
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++L++e++
  Zjn_sc00003.1.g11080.1.am.mk 283 SQNKKLQAEVM 293
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-18185259IPR009057Homeodomain-like
SuperFamilySSF466894.19E-19194260IPR009057Homeodomain-like
PROSITE profilePS5007117.346198258IPR001356Homeobox domain
SMARTSM003891.3E-17201262IPR001356Homeobox domain
PfamPF000466.6E-15203256IPR001356Homeobox domain
CDDcd000865.18E-16203259No hitNo description
PRINTSPR000313.8E-5229238IPR000047Helix-turn-helix motif
PROSITE patternPS000270233256IPR017970Homeobox, conserved site
PRINTSPR000313.8E-5238254IPR000047Helix-turn-helix motif
PfamPF021831.6E-11258294IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MEKESKWKRE REDERVKWKQ RAAGRTNRAM CGCGLARTPA PGKQGGEHRK WWARTHEPCT  60
LHVSLCVEPS CCYRCCSNSD PYMYVSMDVR SPSYTNGMAS SPPFFPPNFL LQMQQAPPDH  120
DPQEHHQHHH HLPPPPLHPH HNPFLASSQC PSLQDFRGMA PMLGKRPMYG ADVGGGDEVN  180
GCGGGGGANE DELSDDGSQA GEKKRRLNVE QVRTLEKNFE LGNKLEPERK LQLARALGLQ  240
PRQVAIWFQN RRARWKTKQL EKDYDALKRQ LDAVQADNDA LLSQNKKLQA EVMSRLTLAE  300
LGSMWVSVLA AKRLLEAAAI GAAFSPARVV RTDCILWNLA AAKPGQREAF WKSQQQNMQR  360
GRCHRTGRWI HHGSFASFGR TASLCLVSEL SVCALLPCQY HLMNLLYVLY EELQILALKG  420
GREAGSELIN LNKKTEASCS NRSENSSEIN LDISRTPPSE GSMDPPAHHH PEHASNGGGM  480
IPFYPSAGRT AGVDIDQLLH SSSGPKIEQQ GNGAGGGVQA PETASFGNLL CGVDEPPPFW  540
PWADHHPSID D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250258RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664901e-172EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
GenBankKJ7285061e-172KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.11e-111homeobox-leucine zipper protein HOX21
SwissprotA2XD082e-75HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBLC5WVY21e-110C5WVY2_SORBI; Uncharacterized protein
STRINGSb01g045740.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.15e-55HD-ZIP family protein